|
| Status |
Public on Apr 17, 2019 |
| Title |
Tumor_11378 |
| Sample type |
genomic |
| |
|
| Source name |
Human breast tumor
|
| Organism |
Homo sapiens |
| Characteristics |
8p11-p12 amplification: Amplified
age: 61
pt status: pT3
lymph node status: pN1
er status: neg
pgr status: neg
her2 status: pos
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was isolated from fresh-frozen tissue specimens using the Wizard Genomic DNA extraction kit, including proteinase K treatment followed by phenol chloroform purification
|
| Label |
cy3 and cy5
|
| Label protocol |
Illumina protocol
|
| |
|
| Hybridization protocol |
Illumina protocol
|
| Scan protocol |
Standard Illumina iScan N240 scanning protocol
|
| Description |
Genomic DNA extracted from breast tumors was genotyped using Infinium Omni2.5-8 v1.3 Genotyping BeadChips (Illumina)
|
| Data processing |
GenomeStudio Software V2011.1
B allele frequency
Log R ratio
|
| |
|
| Submission date |
Jun 27, 2017 |
| Last update date |
Apr 17, 2019 |
| Contact name |
Toshima Z. Parris |
| E-mail(s) |
toshima.parris@oncology.gu.se
|
| Organization name |
University of Gothenburg
|
| Department |
Department of Oncology
|
| Lab |
Sahlgrenska Cancer Center
|
| Street address |
Medicinaregatan 1G, 6th floor
|
| City |
Gothenburg |
| ZIP/Postal code |
41390 |
| Country |
Sweden |
| |
|
| Platform ID |
GPL23668 |
| Series (2) |
| GSE97293 |
Genome-wide multi-omics profiling reveals extensive genetic complexity in 8p11-p12 amplified breast carcinomas |
| GSE100529 |
Genome-wide multi-omics profiling reveals extensive genetic complexity in 8p11-p12 amplified breast carcinomas [SNP_genotyping] |
|
