|
| Status |
Public on Oct 01, 2017 |
| Title |
T7A2 |
| Sample type |
genomic |
| |
|
| Source name |
T7A2
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: xenograft tumor
tumor type: recurrent GBM
cell type: GBM
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
none provided by the submitter
|
| Label |
biotin
|
| Label protocol |
QIAamp® DNA kit (Qiagen, Germany) was used to prepare genomic DNA from patient tumor-derived cultured GSCs. QIAamp® DNA Blood Mini Kit (Qiagen, Germany) was used to prepare DNA from patient reference blood.
|
| |
|
| Hybridization protocol |
Purified DNA was hybridized onto arrays according to the manufacturer's recommendations (Affymetrix Human SNP array 6.0 and CytoScan® HD array).
|
| Scan protocol |
After hybridization, the arrays were stained on the Affymetrix GeneChip® fluidics station 450 and scanned at high resolution using the GeneChip® Scanner 3000 7G.
|
| Description |
Hybridized to CytoScan HD
CytoScan HD
|
| Data processing |
CEL files are imported into Partek Genomics Suite 6.6 and matrix file generated. Copy number
|
| |
|
| Submission date |
Jul 10, 2017 |
| Last update date |
Jan 23, 2018 |
| Contact name |
mehmet baysan |
| E-mail(s) |
baysan@gmail.com
|
| Organization name |
Istanbul Sehir university
|
| Department |
Department of Computer Science
|
| Street address |
Kuşbakışı Caddesi No: 27 34662 Altunizade – Üsküdar – İstanbul Office: East Campus 108
|
| City |
Istanbul |
| ZIP/Postal code |
34662 |
| Country |
Turkey |
| |
|
| Platform ID |
GPL16131 |
| Series (2) |
| GSE101110 |
Detailed Longitudinal Sampling of Glioma Stem Cells In Situ Reveals Chr7 Gain and Chr10 Loss As Repeated Events in Primary Tumor Formation and Recurrence (SNP) |
| GSE101114 |
Detailed Longitudinal Sampling of Glioma Stem Cells In Situ Reveals Chr7 Gain and Chr10 Loss As Repeated Events in Primary Tumor Formation and Recurrence |
|
