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Sample GSM27089 Query DataSets for GSM27089
Status Public on Dec 20, 2004
Title RT_MDX_12
Sample type RNA
 
Channel 1
Source name MDX t=6wks individual B
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name MDX t=4wks individual B
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Timecourse experiment, loop design, mdx
 
Submission date Jul 20, 2004
Last update date May 27, 2005
Contact name Rolf Turk
E-mail(s) rturk@lumc.nl
Phone +31 71 527 6611
Organization name Leiden University Medical Center
Department Center for Human and Clinical Genetics
Lab den Dunnen
Street address Wassenaarseweg 72
City Leiden
ZIP/Postal code 2333AL
Country Netherlands
 
Platform ID GPL485
Series (1)
GSE1574 Time-course of mdx and wild type mice

Data table header descriptions
ID_REF
F1 Median Median Foreground Intensity in Channel 1 (Cy5)
F1 Mean Mean Foreground Intensity in Channel 1 (Cy5)
F1 SD Standard Deviation of Foreground in Channel 1 (Cy5)
B1 Median Median Background Intensity in Channel 1 (Cy5)
B1 Mean Mean Background Intensity in Channel 1 (Cy5)
B1 SD Standard Deviation of Background in Channel 1 (Cy5)
F2 Median Median Foreground Intensity in Channel 2 (Cy3)
F2 Mean Mean Foreground Intensity in Channel 2 (Cy3)
F2 SD Standard Deviation of Foreground in Channel 2 (Cy3)
B2 Median Median Background Intensity in Channel 2 (Cy3)
B2 Mean Mean Background Intensity in Channel 2 (Cy3)
B2 SD Standard Deviation of Background in Channel 2 (Cy3)
Flags Flagged spots according to GenePix (Axon)
Norm_F1-B1 Normalized Gene Expression Level of Channel 1 (Cy5)
Norm_F2-B2 Normalized Gene Expression Level of Channel 2 (Cy3)
VALUE Ratio of Norm_F1-B1 over Norm_F2-B2

Data table
ID_REF F1 Median F1 Mean F1 SD B1 Median B1 Mean B1 SD F2 Median F2 Mean F2 SD B2 Median B2 Mean B2 SD Flags Norm_F1-B1 Norm_F2-B2 VALUE
LGTCmuOLIs1_1 900 899 127 827 842 114 465 472 67 420 432 56 -75 0.487815491 0.541639165 -0.053823673
LGTCmuOLIs1_2 1274 2367 5602 824 825 91 433 449 97 420 427 50 0 1.981245249 -0.056688427 2.037933676
LGTCmuOLIs1_3 731 733 104 774 793 138 445 447 44 411 426 71 -50 -0.418594261 0.346608373 -0.765202634
LGTCmuOLIs1_4 893 896 115 737 750 117 499 504 57 395 407 69 -50 1.002316207 1.311563523 -0.309247317
LGTCmuOLIs1_5 1243 1243 146 724 734 104 679 682 76 391 398 55 0 2.122250713 2.372669216 -0.250418504
LGTCmuOLIs1_6 874 879 78 709 724 128 478 479 38 390 400 58 -50 1.048579124 1.143011515 -0.094432391
LGTCmuOLIs1_7 948 951 70 711 730 146 566 566 36 394 409 74 0 1.366827154 1.834111421 -0.467284267
LGTCmuOLIs1_8 856 830 135 700 719 121 473 457 74 398 410 73 0 1.002316207 0.986626911 0.015689296
LGTCmuOLIs1_9 882 884 71 651 666 102 607 610 40 382 392 51 0 1.343353254 2.115231311 -0.771878057
LGTCmuOLIs1_10 708 710 74 661 678 229 418 428 46 393 407 66 -50 0.292875941 0.176820695 0.116055246
LGTCmuOLIs1_11 727 726 68 667 682 234 485 482 35 399 412 65 -50 0.392111977 1.120180758 -0.728068781
LGTCmuOLIs1_12 1268 1264 102 655 662 107 658 655 49 399 410 60 0 2.287712264 2.262142722 0.025569542
LGTCmuOLIs1_13 938 5994 15682 646 672 280 603 1296 4927 396 404 91 0 1.561824025 2.028030546 -0.466206521
LGTCmuOLIs1_14 722 719 66 651 681 299 432 431 38 398 404 98 -50 0.473341535 0.346608373 0.126733162
LGTCmuOLIs1_15 1314 1321 118 680 679 82 909 909 67 420 421 49 0 2.321284947 2.919993914 -0.598708967
LGTCmuOLIs1_16 749 759 98 706 705 77 482 493 63 430 431 43 -50 0.261726697 0.656989833 -0.395263137
LGTCmuOLIs1_17 2583 2604 181 705 703 92 1853 1842 170 418 419 61 0 3.409463867 4.015881304 -0.606417437
LGTCmuOLIs1_18 625 627 66 699 696 85 425 427 39 423 418 51 -50 -0.637597177 -0.268408149 -0.369189027
LGTCmuOLIs1_19 1470 1465 146 816 823 122 917 908 88 408 417 58 0 2.352262755 2.961168783 -0.608906029
LGTCmuOLIs1_20 856 871 132 838 845 131 427 441 65 418 434 69 -50 0.062460206 -0.13446731 0.196927516

Total number of rows: 15552

Table truncated, full table size 1568 Kbytes.




Supplementary data files not provided
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