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Sample GSM27090 Query DataSets for GSM27090
Status Public on Dec 20, 2004
Title RT_MDX_13
Sample type RNA
 
Channel 1
Source name MDX t=8wks individual B
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name MDX t-6wks individual B
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Timecourse experiment, loop design, mdx
 
Submission date Jul 20, 2004
Last update date May 27, 2005
Contact name Rolf Turk
E-mail(s) rturk@lumc.nl
Phone +31 71 527 6611
Organization name Leiden University Medical Center
Department Center for Human and Clinical Genetics
Lab den Dunnen
Street address Wassenaarseweg 72
City Leiden
ZIP/Postal code 2333AL
Country Netherlands
 
Platform ID GPL485
Series (1)
GSE1574 Time-course of mdx and wild type mice

Data table header descriptions
ID_REF
F1 Median Median Foreground Intensity in Channel 1 (Cy5)
F1 Mean Mean Foreground Intensity in Channel 1 (Cy5)
F1 SD Standard Deviation of Foreground in Channel 1 (Cy5)
B1 Median Median Background Intensity in Channel 1 (Cy5)
B1 Mean Mean Background Intensity in Channel 1 (Cy5)
B1 SD Standard Deviation of Background in Channel 1 (Cy5)
F2 Median Median Foreground Intensity in Channel 2 (Cy3)
F2 Mean Mean Foreground Intensity in Channel 2 (Cy3)
F2 SD Standard Deviation of Foreground in Channel 2 (Cy3)
B2 Median Median Background Intensity in Channel 2 (Cy3)
B2 Mean Mean Background Intensity in Channel 2 (Cy3)
B2 SD Standard Deviation of Background in Channel 2 (Cy3)
Flags Flagged spots according to GenePix (Axon)
Norm_F1-B1 Normalized Gene Expression Level of Channel 1 (Cy5)
Norm_F2-B2 Normalized Gene Expression Level of Channel 2 (Cy3)
VALUE Ratio of Norm_F1-B1 over Norm_F2-B2

Data table
ID_REF F1 Median F1 Mean F1 SD B1 Median B1 Mean B1 SD F2 Median F2 Mean F2 SD B2 Median B2 Mean B2 SD Flags Norm_F1-B1 Norm_F2-B2 VALUE
LGTCmuOLIs1_1 522 577 486 515 529 105 392 415 172 367 372 48 -75 -0.271967105 0.093041677 -0.365008782
LGTCmuOLIs1_2 982 1986 5866 482 494 112 408 417 79 352 356 54 0 2.235541517 0.683673988 1.55186753
LGTCmuOLIs1_3 673 689 147 509 518 91 502 499 67 373 381 62 -50 1.068880004 1.553038012 -0.484158008
LGTCmuOLIs1_4 740 760 107 551 555 74 527 533 73 415 422 72 0 1.212777305 1.399572514 -0.18679521
LGTCmuOLIs1_5 898 915 182 533 583 438 525 533 74 383 400 138 0 1.903798018 1.657429812 0.246368206
LGTCmuOLIs1_6 749 777 478 563 645 489 477 472 67 379 396 123 -50 1.19638043 1.255370834 -0.058990404
LGTCmuOLIs1_7 1074 1092 143 686 728 545 549 553 61 406 417 100 0 1.968370158 1.665057319 0.303312839
LGTCmuOLIs1_8 725 750 303 475 504 139 477 479 57 348 364 151 0 1.504004257 1.553038012 -0.049033755
LGTCmuOLIs1_9 864 875 180 501 519 130 459 462 77 357 366 137 0 1.897989572 1.298441341 0.59954823
LGTCmuOLIs1_10 716 717 204 521 538 129 453 456 58 362 369 64 -50 1.244909427 1.175999815 0.068909612
LGTCmuOLIs1_11 858 866 115 520 640 1528 472 466 52 355 375 332 0 1.82253037 1.446947563 0.375582807
LGTCmuOLIs1_12 1108 1160 323 472 601 1497 614 622 71 345 362 322 0 2.487393672 2.345258948 0.142134724
LGTCmuOLIs1_13 898 939 318 464 487 195 475 484 73 339 341 40 0 2.086589072 1.61049487 0.476094202
LGTCmuOLIs1_14 835 863 219 492 516 156 497 497 58 340 346 40 0 1.83806211 1.76649675 0.07156536
LGTCmuOLIs1_15 1578 1593 194 500 521 152 600 601 59 334 338 49 0 3.033839678 2.333335642 0.700504036
LGTCmuOLIs1_16 806 827 166 463 490 170 432 430 37 320 326 53 0 1.83806211 1.399572514 0.438489596
LGTCmuOLIs1_17 2678 2714 199 421 437 105 796 795 54 306 311 43 0 3.788194625 2.974911223 0.813283401
LGTCmuOLIs1_18 583 586 86 421 428 79 364 365 38 307 311 41 0 1.056614752 0.7003308 0.356283952
LGTCmuOLIs1_19 1123 1134 161 530 556 470 507 550 403 353 360 57 0 2.414290252 1.745557976 0.668732277
LGTCmuOLIs1_20 676 675 66 499 518 100 443 449 44 346 356 47 0 1.145808544 1.244351425 -0.098542881

Total number of rows: 15552

Table truncated, full table size 1566 Kbytes.




Supplementary data files not provided
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