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Sample GSM27111 Query DataSets for GSM27111
Status Public on Dec 20, 2004
Title RT_WT_02
Sample type RNA
 
Channel 1
Source name WT t=1wk individual A
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name WT t=2.5wks individual A
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Wildtype timecourse microarray data
 
Submission date Jul 20, 2004
Last update date May 27, 2005
Contact name Rolf Turk
E-mail(s) rturk@lumc.nl
Phone +31 71 527 6611
Organization name Leiden University Medical Center
Department Center for Human and Clinical Genetics
Lab den Dunnen
Street address Wassenaarseweg 72
City Leiden
ZIP/Postal code 2333AL
Country Netherlands
 
Platform ID GPL485
Series (1)
GSE1574 Time-course of mdx and wild type mice

Data table header descriptions
ID_REF
F1 Median Median Foreground Intensity in Channel 1 (Cy5)
F1 Mean Mean Foreground Intensity in Channel 1 (Cy5)
F1 SD Standard Deviation of Foreground in Channel 1 (Cy5)
B1 Median Median Background Intensity in Channel 1 (Cy5)
B1 Mean Mean Background Intensity in Channel 1 (Cy5)
B1 SD Standard Deviation of Background in Channel 1 (Cy5)
F2 Median Median Foreground Intensity in Channel 2 (Cy3)
F2 Mean Mean Foreground Intensity in Channel 2 (Cy3)
F2 SD Standard Deviation of Foreground in Channel 2 (Cy3)
B2 Median Median Background Intensity in Channel 2 (Cy3)
B2 Mean Mean Background Intensity in Channel 2 (Cy3)
B2 SD Standard Deviation of Background in Channel 2 (Cy3)
Flags Flagged spots according to GenePix (Axon)
Norm_F1-B1 Normalized Gene Expression Level of Channel 1 (Cy5)
Norm_F2-B2 Normalized Gene Expression Level of Channel 2 (Cy3)
VALUE Ratio of Norm_F1-B1 over Norm_F2-B2

Data table
ID_REF F1 Median F1 Mean F1 SD B1 Median B1 Mean B1 SD F2 Median F2 Mean F2 SD B2 Median B2 Mean B2 SD Flags Norm_F1-B1 Norm_F2-B2 VALUE
LGTCmuOLIs1_1 358 366 75 362 388 420 397 398 50 354 362 64 -75 0.056728533 0.747500918 -0.690772385
LGTCmuOLIs1_2 982 1779 3200 402 404 60 372 388 62 342 349 48 0 1.733224238 0.574358071 1.158866167
LGTCmuOLIs1_3 490 493 69 487 503 225 429 435 51 369 376 59 -50 0.088817206 0.948413433 -0.859596228
LGTCmuOLIs1_4 1072 1078 349 553 568 220 587 578 121 393 400 56 0 1.632534078 1.906011586 -0.273477508
LGTCmuOLIs1_5 862 873 86 540 555 96 535 533 62 395 398 51 0 1.224996342 1.611577996 -0.386581654
LGTCmuOLIs1_6 622 618 81 554 577 137 431 440 70 408 411 52 -50 0.37859325 0.474021003 -0.095427753
LGTCmuOLIs1_7 1641 1633 188 611 635 179 729 740 89 434 446 71 0 2.274371933 2.300737107 -0.026365175
LGTCmuOLIs1_8 708 718 76 641 703 358 544 552 91 489 508 120 -50 0.374304322 0.892186186 -0.517881864
LGTCmuOLIs1_9 1941 1916 291 686 756 372 946 963 191 503 512 111 0 2.465748595 2.693964801 -0.228216206
LGTCmuOLIs1_10 839 845 122 769 868 279 508 510 46 491 510 97 -50 0.38715114 0.384309962 0.002841179
LGTCmuOLIs1_11 1453 1304 336 867 935 291 692 648 124 508 528 112 -50 1.742634386 1.857315709 -0.114681323
LGTCmuOLIs1_12 972 980 155 864 1022 1296 561 584 166 504 531 296 -50 0.544285264 0.914952932 -0.370667668
LGTCmuOLIs1_13 2582 2583 146 842 1006 1238 1071 1070 53 483 513 277 0 2.785479632 2.971282169 -0.185802538
LGTCmuOLIs1_14 823 871 298 924 1054 376 524 514 112 520 542 98 -50 -0.379891743 0.180240803 -0.560132546
LGTCmuOLIs1_15 5730 5653 793 914 1041 490 2077 2035 228 515 540 117 0 3.794267545 3.938581755 -0.144314211
LGTCmuOLIs1_16 1044 1059 194 935 1101 607 549 554 65 512 548 156 -50 0.54827191 0.669745519 -0.121473609
LGTCmuOLIs1_17 13263 13200 1382 951 1158 932 4459 4386 551 516 563 169 0 4.73040783 4.86150866 -0.13110083
LGTCmuOLIs1_18 1131 1130 164 1078 1175 554 561 564 51 544 572 135 -50 0.313590831 0.384309962 -0.070719131
LGTCmuOLIs1_19 4504 4373 790 355 369 77 1730 1682 320 340 347 69 0 3.645909877 3.822575728 -0.17666585
LGTCmuOLIs1_20 476 498 95 409 419 79 367 374 69 340 350 64 -50 0.374304322 0.531950261 -0.157645939

Total number of rows: 15552

Table truncated, full table size 1575 Kbytes.




Supplementary data files not provided
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