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| Status |
Public on Oct 15, 2020 |
| Title |
MF2_liver_10d |
| Sample type |
SRA |
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| Source name |
liver
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| Organism |
Alexandromys fortis |
| Characteristics |
tissue: liver
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| Treatment protocol |
The Microtus fortis were challenged percutaneously with 40 ± 1 Schistosoma japonicum cercariae.
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA libraries were prepared for sequencing using standard Illumina protocols
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
HiSeq X Ten |
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| Data processing |
Illumina Casava software used for basecalling.
Sequenced reads were trimmed for adaptor sequence and removed low-quality bases, then were mapped to the genome of Microtus fortis. Gene expression levels were estimated by the RSEM algorithm.
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files include the expression values of UCSC known genes.
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| Submission date |
Jul 19, 2017 |
| Last update date |
Oct 08, 2020 |
| Contact name |
hong li |
| E-mail(s) |
lihong01@sibs.ac.cn
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| Organization name |
SIBS
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| Street address |
320 Yueyang Road
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| City |
Shanghai |
| ZIP/Postal code |
200031 |
| Country |
China |
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| Platform ID |
GPL23807 |
| Series (1) |
| GSE101654 |
Microtus fortis liver RNA-Seq during Schistosoma japonicum infection |
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| Relations |
| BioSample |
SAMN07370812 |
| SRA |
SRX3020625 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2711549_MF2_liver_10d.rsem.genes.results.txt.gz |
858.6 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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