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Sample GSM27126 Query DataSets for GSM27126
Status Public on Dec 20, 2004
Title RT_WT_17
Sample type RNA
 
Channel 1
Source name WT t=12wks individual B
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name WT t=14wks individual B
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Wildtype timecourse microarray data
 
Submission date Jul 20, 2004
Last update date May 27, 2005
Contact name Rolf Turk
E-mail(s) rturk@lumc.nl
Phone +31 71 527 6611
Organization name Leiden University Medical Center
Department Center for Human and Clinical Genetics
Lab den Dunnen
Street address Wassenaarseweg 72
City Leiden
ZIP/Postal code 2333AL
Country Netherlands
 
Platform ID GPL485
Series (1)
GSE1574 Time-course of mdx and wild type mice

Data table header descriptions
ID_REF
F1 Median Median Foreground Intensity in Channel 1 (Cy5)
F1 Mean Mean Foreground Intensity in Channel 1 (Cy5)
F1 SD Standard Deviation of Foreground in Channel 1 (Cy5)
B1 Median Median Background Intensity in Channel 1 (Cy5)
B1 Mean Mean Background Intensity in Channel 1 (Cy5)
B1 SD Standard Deviation of Background in Channel 1 (Cy5)
F2 Median Median Foreground Intensity in Channel 2 (Cy3)
F2 Mean Mean Foreground Intensity in Channel 2 (Cy3)
F2 SD Standard Deviation of Foreground in Channel 2 (Cy3)
B2 Median Median Background Intensity in Channel 2 (Cy3)
B2 Mean Mean Background Intensity in Channel 2 (Cy3)
B2 SD Standard Deviation of Background in Channel 2 (Cy3)
Flags Flagged spots according to GenePix (Axon)
Norm_F1-B1 Normalized Gene Expression Level of Channel 1 (Cy5)
Norm_F2-B2 Normalized Gene Expression Level of Channel 2 (Cy3)
VALUE Ratio of Norm_F1-B1 over Norm_F2-B2

Data table
ID_REF F1 Median F1 Mean F1 SD B1 Median B1 Mean B1 SD F2 Median F2 Mean F2 SD B2 Median B2 Mean B2 SD Flags Norm_F1-B1 Norm_F2-B2 VALUE
LGTCmuOLIs1_1 625 627 50 598 629 521 342 343 27 327 331 33 -75 0.128048367 -0.665115949 0.793164316
LGTCmuOLIs1_2 1002 1827 3931 583 647 1313 360 376 77 314 323 94 0 2.373664739 0.381975509 1.991689229
LGTCmuOLIs1_3 678 1420 5524 565 570 71 476 537 562 324 335 48 0 1.058639369 2.136336019 -1.07769665
LGTCmuOLIs1_4 741 742 70 552 591 674 452 448 39 314 325 120 0 1.560118272 2.012818596 -0.452700324
LGTCmuOLIs1_5 814 813 83 534 541 66 467 465 33 302 309 39 0 1.960277548 2.23910437 -0.278826822
LGTCmuOLIs1_6 649 651 59 492 496 56 371 372 26 279 282 39 0 1.374795445 1.458455307 -0.083659863
LGTCmuOLIs1_7 1032 1032 93 478 494 218 509 502 41 275 281 47 0 2.659599734 2.658474975 0.001124759
LGTCmuOLIs1_8 605 606 59 471 496 262 351 352 24 276 285 46 0 1.219998185 1.153302139 0.066696046
LGTCmuOLIs1_9 1275 1255 145 475 480 56 599 594 47 273 278 36 0 3.034323117 3.035942163 -0.001619047
LGTCmuOLIs1_10 581 583 57 458 461 47 347 347 28 258 262 29 0 1.138123419 1.410167833 -0.272044414
LGTCmuOLIs1_11 948 946 64 447 453 98 492 492 29 254 255 23 0 2.556748108 2.678189154 -0.121441046
LGTCmuOLIs1_12 1724 1731 145 450 454 46 477 474 42 251 253 25 0 3.506405873 2.617853255 0.888552618
LGTCmuOLIs1_13 1414 1419 110 458 463 46 619 616 44 253 255 25 0 3.215366931 3.164229593 0.051137338
LGTCmuOLIs1_14 637 634 62 464 469 47 344 347 29 252 253 23 0 1.471312788 1.458455307 0.012857481
LGTCmuOLIs1_15 2992 2899 502 463 472 67 1122 1079 205 250 255 42 0 4.198204796 4.090496743 0.107708052
LGTCmuOLIs1_16 592 594 55 458 470 80 338 339 25 248 258 54 0 1.219998185 1.426495849 -0.206497663
LGTCmuOLIs1_17 6749 6480 1064 450 460 67 2396 2316 316 245 256 49 0 5.114698015 5.017746155 0.096951861
LGTCmuOLIs1_18 540 554 201 442 445 47 325 335 69 244 247 29 0 0.929355245 1.270359135 -0.34100389
LGTCmuOLIs1_19 2470 2414 306 575 583 97 1051 1028 106 312 313 28 0 3.90746952 3.917558354 -0.010088833
LGTCmuOLIs1_20 702 883 1956 566 640 1381 404 420 147 306 314 99 0 1.234302772 1.549156937 -0.314854165

Total number of rows: 15552

Table truncated, full table size 1557 Kbytes.




Supplementary data files not provided
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