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Sample GSM27159 Query DataSets for GSM27159
Status Public on Nov 05, 2004
Title HNF6_2-
Sample type RNA
 
Source name INS-1 cell line #2 with non-induced HNF6
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description A rat insulinoma cell line (INS-1) was generated that contains a FRT site for FLP recombinase mediated site specific integration of specific genes. In addition, the line contains the tetracycline repressor allowing tetracycline (tet) induction of the introduced gene. By comparing the gene expression profiles of uninduced and induced cells, target genes of introduced transcription factor can be identified. This entry corresponds to the RNA isolated from uninduced INS-1 cell line #2 containing hepatocyte nuclear factor-6 (HNF6; onecut1).
Keywords = INS-1
Keywords = beta-cell
Keywords = HNF6
Keywords = onecut1
Keywords = tetracycline
Keywords = FRT
 
Submission date Jul 21, 2004
Last update date May 27, 2005
Contact name Ludger Klein-Hitpass
E-mail(s) ludger.klein-hitpass@uni-essen.de
Phone +49 201 723 85552
Organization name Institut fuer Zellbiologie
Department Universitaetsklinikum
Lab BioChip Lab
Street address Virchowstr. 173
City Essen
ZIP/Postal code D-45122
Country Germany
 
Platform ID GPL341
Series (2)
GSE1589 Targets of HNF1b, HNF4a2 and HNF6 in INS-1 cells
GSE6428 HNF1b, HNF4a2 and HNF6 targets

Data table header descriptions
ID_REF
VALUE ‘signal’, a measure of the abundance of the transcript
ABS_CALL the call in an absolute analysis that indicates whether a transcript is reliably detected (Present, P) or not detected (Absent, A)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 328.3 P 0.00141
AFFX-BioB-M_at 596 P 0.000446
AFFX-BioB-3_at 143.6 P 0.00762
AFFX-BioC-5_at 775.3 P 0.000081
AFFX-BioC-3_at 510.4 P 0.000052
AFFX-BioDn-5_at 506.3 P 0.001796
AFFX-BioDn-3_at 3561.5 P 0.000195
AFFX-CreX-5_at 7448.2 P 0.000044
AFFX-CreX-3_at 14178.2 P 0.000044
AFFX-DapX-5_at 92.8 P 0.00141
AFFX-DapX-M_at 239.5 P 0.006871
AFFX-DapX-3_at 235.1 P 0.001248
AFFX-LysX-5_at 1455.7 P 0.000044
AFFX-LysX-M_at 2269.5 P 0.000044
AFFX-LysX-3_at 3514.5 P 0.000044
AFFX-PheX-5_at 3779.5 P 0.000044
AFFX-PheX-M_at 4106.5 P 0.000044
AFFX-PheX-3_at 4615.1 P 0.000044
AFFX-ThrX-5_at 502.2 P 0.000044
AFFX-ThrX-M_at 760.9 P 0.000044

Total number of rows: 15923

Table truncated, full table size 431 Kbytes.




Supplementary data files not provided

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