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Sample GSM27171 Query DataSets for GSM27171
Status Public on Nov 05, 2004
Title A263insGG_mut4a-
Sample type RNA
Source name INS-1 cell line #4a with non-induced HNF1b mutant A263insGG
Organism Rattus norvegicus
Extracted molecule total RNA
Description A rat insulinoma cell line (INS-1) was generated that contains a FRT site for FLP recombinase mediated site specific integration of specific genes. In addition, the line contains the tetracycline repressor allowing tetracycline (tet) induction of the introduced gene. By comparing the gene expression profiles of uninduced and tet-induced cells, target genes of introduced transcription factors can be identified. This entry corresponds to the RNA isolated from uninduced INS-1 cell line #4a containing MODY5 mutant A263insGG of hepatocyte nuclear factor-1b (HNF1b).
Keywords = INS-1
Keywords = beta-cell
Keywords = HNF1b
Keywords = A263insGG
Keywords = MODY5
Keywords = tetracycline
Keywords = FRT
Submission date Jul 21, 2004
Last update date May 27, 2005
Contact name Ludger Klein-Hitpass
Phone +49 201 723 85552
Organization name Institut fuer Zellbiologie
Department Universitaetsklinikum
Lab BioChip Lab
Street address Virchowstr. 173
City Essen
ZIP/Postal code D-45122
Country Germany
Platform ID GPL341
Series (2)
GSE1590 Targets of HNF1b mutants in INS-1
GSE6428 HNF1b, HNF4a2 and HNF6 targets

Data table header descriptions
VALUE ‘signal’, a measure of the abundance of the transcript
ABS_CALL the call in an absolute analysis that indicates whether a transcript is reliably detected (Present, P) or not detected (Absent, A)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 254.4 P 0.000754
AFFX-BioB-M_at 585.6 P 0.000095
AFFX-BioB-3_at 178 P 0.00141
AFFX-BioC-5_at 766.6 P 0.00007
AFFX-BioC-3_at 435.9 P 0.000052
AFFX-BioDn-5_at 1169.6 P 0.000297
AFFX-BioDn-3_at 4530.3 P 0.000195
AFFX-CreX-5_at 7607.6 P 0.000044
AFFX-CreX-3_at 13583.9 P 0.000044
AFFX-DapX-5_at 176.3 P 0.000095
AFFX-DapX-M_at 373.8 P 0.001796
AFFX-DapX-3_at 340.5 P 0.000225
AFFX-LysX-5_at 3107.6 P 0.000044
AFFX-LysX-M_at 4534.5 P 0.000044
AFFX-LysX-3_at 6401.4 P 0.000044
AFFX-PheX-5_at 6090.1 P 0.000044
AFFX-PheX-M_at 7340.1 P 0.000044
AFFX-PheX-3_at 8313.5 P 0.000044
AFFX-ThrX-5_at 1142.7 P 0.000044
AFFX-ThrX-M_at 1354.8 P 0.000044

Total number of rows: 15923

Table truncated, full table size 431 Kbytes.

Supplementary data files not provided

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