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Sample GSM27627 Query DataSets for GSM27627
Status Public on Dec 01, 2004
Title CDV+TPA 72h /Ulatent_3
Sample type RNA
 
Channel 1
Source name BCBL-1 Untreated Latent
Organism Human gammaherpesvirus 8
Extracted molecule total RNA
 
Channel 2
Source name BCBL-1 CDV-treated TPA induced 72hr
Organism Human gammaherpesvirus 8
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 47263
TPA induced BCBL1 with CDV treatment and harvested after 72 hrs versus untreated Latent BCBL-1 cells
Organism synonym: KSHV
Array Print: hhv8v2p4-83
Cell line origin: lymphocytic
Cell Line: BCBL-1
CDV Treatment: 100 microMolar
TPA Induction: 20 ng/ml
Induction Time (hrs): 72
 
Submission date Jul 28, 2004
Last update date Apr 28, 2006
Contact name Michael Lu
E-mail(s) lumi@mail.nih.gov
Phone 301-402-3624
Fax 301-480-8250
Organization name National Cancer Institute
Department HIV and AIDS Malignancy Branch
Lab Zeichner Lab
Street address 10 Center Drive, Blg. 10, Rm 10S255
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1386
Series (1)
GSE1640 Serial time induction by TPA on BCBL-1 cells in the absence or presence of viral replication inhibitor cidofovir

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1040620_1 0.052 1.037 1 1 1 1272 747 65 192 1236 674 56 176 0 0.052
1040634_1 0.364 1.287 1 1 2 1417 403 62 21 1121 405 54 16 0 0.364
1040648_1 2.086 4.246 1 1 3 2279 884 55 19 577 174 46 14 0 2.086
1040662_1 2.166 4.487 1 1 4 1988 543 58 20 482 126 46 15 0 2.166
1040676_1 1.030 2.042 1 1 5 337 181 55 21 184 79 44 14 0 1.030
1040690_1 0.279 1.214 1 1 6 231 89 55 29 188 59 41 14 0 0.279
1040704_1 1.505 2.838 1 1 7 2157 1733 74 66 789 541 45 17 0 1.505
1040814_1 2.135 4.393 1 1 8 151 52 99 48 60 22 48 15 -50 2.135
1040828_1 0.881 1.842 1 1 9 999 365 74 37 552 127 43 14 0 0.881
1040842_1 0.579 1.494 1 1 10 769 250 57 257 522 118 39 13 0 0.579
1040856_1 -0.135 0.911 1 1 11 565 192 53 35 607 129 37 11 0 -0.135
1040870_1 0.266 1.203 1 1 12 291 138 49 30 240 65 36 17 0 0.266
1040884_1 -0.069 0.953 1 1 13 381 118 50 36 388 105 36 23 0 -0.069
1040898_1 -1.023 0.492 1 1 14 576 493 54 30 1112 925 37 17 0 -1.023
1040621_1 1.142 2.207 1 2 1 2034 992 64 20 957 248 52 15 0 1.142
1040635_1 0.680 1.602 1 2 2 950 240 57 18 611 172 46 14 0 0.680
1040649_1 2.253 4.766 1 2 3 4046 1113 54 18 890 202 41 12 0 2.253
1040663_1 1.459 2.749 1 2 4 3303 1165 62 26 1239 202 44 13 0 1.459
1040677_1 1.079 2.112 1 2 5 3158 1000 58 21 1533 466 45 13 0 1.079
1040691_1 2.801 6.968 1 2 6 44710 21876 63 56 6540 3020 45 20 0 2.801

Total number of rows: 1528

Table truncated, full table size 98 Kbytes.




Supplementary file Size Download File type/resource
GSM27627.tif.gz 4.2 Mb (ftp)(http) TIFF

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