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Sample GSM27628 Query DataSets for GSM27628
Status Public on Dec 01, 2004
Title CDV+TPA 96h /Ulatent_1
Sample type RNA
 
Channel 1
Source name BCBL-1 Untreated Latent
Organism Human gammaherpesvirus 8
Extracted molecule total RNA
 
Channel 2
Source name BCBL-1 CDV-treated TPA induced 96hr
Organism Human gammaherpesvirus 8
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 41438
TPA induced BCBL1 with CDV treatment and harvested after 96 hrs versus untreated Latent BCBL-1 cells
Organism synonym: KSHV
Array Print: hhv8v2p4-55
Cell line origin: lymphocytic
Cell Line: BCBL-1
CDV Treatment: 100 microMolar
TPA Induction: 20 ng/ml
Induction Time (hrs): 96
 
Submission date Jul 28, 2004
Last update date Apr 28, 2006
Contact name Michael Lu
E-mail(s) lumi@mail.nih.gov
Phone 301-402-3624
Fax 301-480-8250
Organization name National Cancer Institute
Department HIV and AIDS Malignancy Branch
Lab Zeichner Lab
Street address 10 Center Drive, Blg. 10, Rm 10S255
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1386
Series (1)
GSE1640 Serial time induction by TPA on BCBL-1 cells in the absence or presence of viral replication inhibitor cidofovir

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1040620_1 0.067 1.048 1 1 1 166 110 37 10 139 96 24 5 0 0.067
1040634_1 -0.092 0.938 1 1 2 270 71 37 10 256 53 24 4 0 -0.092
1040648_1 1.190 2.282 1 1 3 764 298 36 9 322 125 24 5 0 1.190
1040662_1 1.414 2.664 1 1 4 709 201 36 44 260 70 24 5 0 1.414
1040676_1 0.234 1.176 1 1 5 178 78 37 9 137 54 25 4 0 0.234
1040690_1 0.395 1.315 1 1 6 115 43 39 11 80 22 26 5 0 0.395
1040704_1 1.644 3.126 1 1 7 2299 2409 40 14 703 684 28 5 0 1.644
1040814_1 2.224 4.671 1 1 8 49 16 44 19 29 6 28 11 -50 2.224
1040828_1 0.868 1.825 1 1 9 171 75 44 14 92 23 27 6 0 0.868
1040842_1 -0.589 0.665 1 1 10 81 24 39 12 83 17 24 5 0 -0.589
1040856_1 -1.123 0.459 1 1 11 155 81 38 17 263 142 25 8 0 -1.123
1040870_1 -0.465 0.725 1 1 12 120 54 37 17 132 59 25 8 0 -0.465
1040884_1 -0.456 0.729 1 1 13 172 77 37 10 197 83 24 5 0 -0.456
1040898_1 -0.660 0.633 1 1 14 352 141 37 10 489 186 24 4 0 -0.660
1040621_1 0.972 1.962 1 2 1 457 260 37 10 225 97 25 4 0 0.972
1040635_1 -0.226 0.855 1 2 2 243 68 38 10 249 61 25 5 0 -0.226
1040649_1 1.355 2.558 1 2 3 1265 382 38 10 472 124 24 4 0 1.355
1040663_1 1.565 2.958 1 2 4 1139 464 37 9 373 153 25 4 0 1.565
1040677_1 0.162 1.119 1 2 5 1442 500 37 10 1199 355 26 5 0 0.162
1040691_1 2.304 4.940 1 2 6 18392 3807 42 14 3497 606 27 5 0 2.304

Total number of rows: 1528

Table truncated, full table size 96 Kbytes.




Supplementary file Size Download File type/resource
GSM27628.tif.gz 3.8 Mb (ftp)(http) TIFF

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