|
| Status |
Public on Mar 25, 2008 |
| Title |
Patient 220963 at week 12 |
| Sample type |
RNA |
| |
|
| Source name |
PBMC samples at week 12
|
| Organism |
Homo sapiens |
| Characteristics |
This sample is from Poor outcome group at week 12
|
| Treatment protocol |
PBMC samples from HIV seropositive patients at different time points
|
| Growth protocol |
PBMC samples
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
Follow Affymetrix's protocol
|
| Scan protocol |
GeneChips were scanned using the GeneArray Scanner
|
| Description |
Gene expression data from patients with Poor outcome at week 12 time point
|
| Data processing |
The data were analyzed using RMA normalization method. Probesets that are "absent" in all samples are eliminated in the laster state of analysis.
|
| |
|
| Submission date |
Mar 24, 2008 |
| Last update date |
Mar 24, 2008 |
| Contact name |
Maryanne Vahey |
| E-mail(s) |
mvahey@hivresearch.org
|
| Phone |
301-251-5058
|
| Fax |
301-762-7460
|
| Organization name |
Walter Reed Army Institute of Research
|
| Department |
|
| Lab |
Laboratory of Functional Genomics
|
| Street address |
1600 East Gude Drive
|
| City |
Rockville |
| State/province |
MD |
| ZIP/Postal code |
20850 |
| Country |
USA |
| |
|
| Platform ID |
GPL201 |
| Series (1) |
| GSE10924 |
CD4+ T Cell Decline is Predicted by Differential Expression of Genes in HIV seropositive patients |
|
