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Sample GSM2792699 Query DataSets for GSM2792699
Status Public on Jan 17, 2018
Title Macaque_5
Sample type genomic
 
Source name Blood
Organism Macaca mulatta
Characteristics age (wks): 780
tissue: blood
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Probes tha uniquely mapped to human chromosome 21 and those which mapped to mouse but not human 21 were kept for analysis.
 
Submission date Sep 25, 2017
Last update date Jan 17, 2018
Contact name Robert Lowe
Organization name QMUL
Department Blizard Institute
Street address 4 Newark Street
City London
ZIP/Postal code E1 2AT
Country United Kingdom
 
Platform ID GPL13534
Series (2)
GSE86059 The rate of ageing-associated DNA methylation dynamics is a molecular readout of lifespan variation amongst mammalian species
GSE104217 The rate of ageing-associated DNA methylation dynamics is a molecular readout of lifespan variation amongst mammalian species [Macaque_450k]

Data table header descriptions
ID_REF
VALUE normalized (quantile normalisation) Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg03706273 0.0458941938377863 0
cg15027426 0.196248575685862 0
cg15329860 0.67403414195867 0.00265800489576684
cg00011891 0.440118393871376 0
cg00014152 0.938975415560833 0
cg00016522 0.255181170302815 0
cg00016934 0.0854929739691315 0
cg00018261 0.572372623972352 0
cg00021786 0.894467634781586 0
cg00026186 0.470126017456115 0
cg00072839 0.214470241446693 0
cg00112256 0.526447232276054 0
cg00114913 0.357501862233897 0
cg00139317 0.490638040721549 0
cg00140085 0.337091844341733 0
cg00142683 0.445977433684186 0
cg00206414 0.0570648247160487 0
cg00241296 0.283368045224636 0
cg00241907 0.457227843917669 0
cg00243584 0.34364349810837 0

Total number of rows: 123795

Table truncated, full table size 3791 Kbytes.




Supplementary data files not provided
Processed data are available on Series record
Processed data included within Sample table

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