|
Status |
Public on Mar 10, 2018 |
Title |
8_denerv_2_mRNA |
Sample type |
RNA |
|
|
Source name |
Denervated bladders from rats after bilat. pelvicus freezing
|
Organism |
Rattus norvegicus |
Characteristics |
strain: Sprague Dawley gender: female age: ~3 months tissue: urinary bladder in vivo treatments: surgery and bilateral ganglion freezing tissue harvesting: euthanization cell type: over 95percent smooth muscle
|
Treatment protocol |
surgery (Sham samples) and surgery and bilateral ganglion freezing (for denerv samples)
|
Extracted molecule |
total RNA |
Extraction protocol |
miRneasy plus RNeasy MinElute Cleanup
|
Label |
Biotin Allonamide Triphosphate
|
Label protocol |
Biotin Allonamide Triphosphate and label incorporation Labelling reaction at 37 degrees
|
|
|
Hybridization protocol |
Following fragmentation, 3.5ug of ssDNA were hybridized. See further information in chapter 3 (https://www.thermofisher.com/search/results?persona=DocSupport&refinementSearch=true&query=Manuals+%26+Protocols&navId=4294959596&refinementQuery=WT+PLUS+)
|
Scan protocol |
GeneChips were scanned using the Genechip Scanner 3000. GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
|
Data processing |
normalised using RMA method. CHP files extracted from Affymetrix Expression Console Software v1.4.1.46
|
|
|
Submission date |
Oct 03, 2017 |
Last update date |
Mar 10, 2018 |
Contact name |
Jessica Margareta Lindvall |
E-mail(s) |
jessica.lindvall@nbis.se
|
Organization name |
SciLifeLab. Stockholm University
|
Department |
NBIS
|
Street address |
Tomtebodavägen 23A
|
City |
Solna |
ZIP/Postal code |
11111 |
Country |
Sweden |
|
|
Platform ID |
GPL17117 |
Series (2) |
GSE104538 |
Gene activity induced by denervation in the rat urinary bladder [mRNA] |
GSE104540 |
Gene activity induced by denervation in the rat urinary bladder |
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