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GEO accession:
Sample GSM2812
Query DataSets for GSM2812
Status
Public on Nov 21, 2002
Title
Mnk_3220-S-3
Sample type
RNA
Source name
PBMC from Rhesus Macaque
Organism
Macaca mulatta
Extracted molecule
total RNA
Description
Animal #3220
Slow progression group
Three weeks Post-Infection with SIV MAC251
Submission date
Nov 21, 2002
Last update date
May 27, 2005
Contact name
Maryanne Vahey
E-mail(s)
mvahey@hivresearch.org
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL80
Series (1)
GSE512
Peripheral Blood Mononuclear Cells of Rhesus Macaques Infected with SIVmac251
Data table header descriptions
ID_REF
Positive
Number of positive probe pairs
Negative
Number of negative probe pairs
Pairs In Avg
Trimmed probe pair set
Pos Fraction
Positive/pairs used
VALUE
Average difference intensity
ABS_CALL
Absolute call of Presence or Absence of gene transcript in sample
Data table
ID_REF
Positive
Negative
Pairs In Avg
Pos Fraction
VALUE
ABS_CALL
AFFX-BioB-5_at
17
1
19
0.85
22120.9
P
AFFX-BioB-M_at
18
0
20
0.9
29937.4
P
AFFX-BioB-3_at
19
0
19
0.95
19277
P
AFFX-BioC-5_at
18
0
19
0.9
52677.8
P
AFFX-BioC-3_at
19
0
20
0.95
54532.7
P
AFFX-BioDn-5_at
18
0
20
0.9
27612.2
P
AFFX-BioDn-3_at
18
0
19
0.9
73046.6
P
AFFX-CreX-5_at
20
0
20
1
312518.3
P
AFFX-CreX-3_at
19
0
20
0.95
363434.4
P
AFFX-BioB-5_st
6
6
19
0.3
1067.2
A
AFFX-BioB-M_st
5
6
18
0.25
77.3
A
AFFX-BioB-3_st
6
6
20
0.3
-1971.1
A
AFFX-BioC-5_st
3
7
17
0.15
-1019
A
AFFX-BioC-3_st
6
6
19
0.3
984.7
A
AFFX-BioDn-5_st
6
4
19
0.3
2230.2
A
AFFX-BioDn-3_st
6
3
19
0.3
2460.6
A
AFFX-CreX-5_st
7
3
18
0.35
2328.5
A
AFFX-CreX-3_st
7
5
18
0.35
1267.4
A
hum_alu_at
68
0
69
0.99
949830.8
P
AFFX-DapX-5_at
2
4
19
0.1
-621.7
A
Total number of rows:
7129
Table truncated, full table size
219 Kbytes
.
Supplementary data files not provided
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