|
| Status |
Public on Dec 14, 2018 |
| Title |
wl1 (wntlof) |
| Sample type |
SRA |
| |
|
| Source name |
left ventricle
|
| Organism |
Mus musculus |
| Characteristics |
tissue: heart
age: adult
genotype: wnt lof
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was isolated from ventricle using Trizol.
RNA libraries were made using Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 3000 |
| |
|
| Data processing |
Aligned to mus musculus reference build ensembl R76
alinged reads were counted using the featureCounts Subreads package
Differential expression analysis was performed from counts file using edgeR
Genome_build: mus musculus reference build ensembl R76
Supplementary_files_format_and_content: .txt files of featureCounts and differential expression analysis
|
| |
|
| Submission date |
Nov 03, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Bo Zhang |
| E-mail(s) |
bzhang29@wustl.edu
|
| Phone |
3143624757
|
| Organization name |
Washington University School of Medicine
|
| Department |
Developmental Biology
|
| Lab |
Zhang
|
| Street address |
4515 McKinley Research Bldg 03212
|
| City |
Saint Louis |
| State/province |
Missouri |
| ZIP/Postal code |
63110 |
| Country |
USA |
| |
|
| Platform ID |
GPL21493 |
| Series (2) |
| GSE106507 |
Differential Wnt-mediated Programming and Arrhythmogenesis in Right versus Left Ventricles [wntlof] |
| GSE106509 |
Differential Wnt-mediated Programming and Arrhythmogenesis in Right versus Left Ventricles |
|
| Relations |
| BioSample |
SAMN07975507 |
| SRA |
SRX3360225 |
