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Sample GSM2846 Query DataSets for GSM2846
Status Public on Dec 06, 2002
Title H9LMS00111005
Sample type RNA
 
Source name placenta
Organism Homo sapiens
Extracted molecule total RNA
 
Description Large-scale analysis of the human transcriptome.
Placenta
Source: Clontech, http://www.clontech.com/archive/OCT01UPD/pdf/PremiumRNA.pdf
Analyzed using the Affymetrix MAS4 algorithm.
Background: Avg: 112.58 Stdv: 5.92 Min: 101.51 Max: 123.76
 
Submission date Nov 22, 2002
Last update date Mar 20, 2006
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL91
Series (1)
GSE96 Large-scale analysis of the human transcriptome

Data table header descriptions
ID_REF Affymetrix Probe Set Identifier
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_InAvg
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_InAvg Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
1000_at 12 2 16 16 15 0.75 4.14 0 0 6.00 581.44 P
1001_at 10 0 16 16 14 0.62 2.60 1 0 Undef 183.06 P
1002_f_at 4 3 16 16 15 0.25 0.99 0 0 1.33 175.89 A
1003_s_at 7 7 16 16 14 0.44 0.20 0 0 1.00 29.11 A
1004_at 8 4 16 16 14 0.50 1.05 0 0 2.00 144.76 A
1005_at 13 0 16 16 16 0.81 4.81 0 0 Undef 1716.90 P
1006_at 4 5 16 16 15 0.25 -0.92 0 0 0.80 -59.89 A
1007_s_at 11 0 16 16 15 0.69 5.01 0 0 Undef 1487.91 P
1008_f_at 8 0 16 16 14 0.50 2.54 0 0 Undef 333.11 P
1009_at 12 0 16 16 15 0.75 4.80 0 0 Undef 714.05 P
100_g_at 7 3 16 16 15 0.44 1.34 0 0 2.33 305.93 A
1010_at 3 5 16 16 13 0.19 -1.07 0 0 0.60 -57.40 A
1011_s_at 13 2 16 16 14 0.81 3.27 0 0 6.50 131.63 P
1012_at 4 5 16 16 13 0.25 -0.00 0 0 0.80 -40.65 A
1013_at 7 0 16 16 16 0.44 2.52 0 0 Undef 35.68 P
1014_at 7 2 16 16 15 0.44 2.32 0 0 3.50 95.96 P
1015_s_at 5 3 16 16 14 0.31 1.13 0 0 1.67 151.68 A
1016_s_at 5 3 16 16 15 0.31 0.95 0 0 1.67 13.71 A
1017_at 5 1 16 16 15 0.31 1.68 0 0 5.00 15.53 A
1018_at 3 4 16 16 15 0.19 -0.28 0 0 0.75 -84.62 A

Total number of rows: 12600

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM2846.CEL.gz 3.0 Mb (ftp)(http) CEL

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