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Sample GSM2851 Query DataSets for GSM2851
Status Public on Dec 06, 2002
Title H9LMS00111503
Sample type RNA
 
Source name ovary-pool
Organism Homo sapiens
Extracted molecule total RNA
 
Description Large-scale analysis of the human transcriptome.
Ovary, pooled
Source: CHTN, see PMID 11158614
Analyzed using the Affymetrix MAS4 algorithm.
Background: Avg: 281.10 Stdv: 26.00 Min: 240.25 Max: 341.39
 
Submission date Nov 22, 2002
Last update date Mar 20, 2006
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL91
Series (1)
GSE96 Large-scale analysis of the human transcriptome

Data table header descriptions
ID_REF Affymetrix Probe Set Identifier
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_InAvg
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_InAvg Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
1000_at 9 2 16 16 16 0.56 3.08 0 0 4.50 369.77 P
1001_at 7 1 16 16 15 0.44 1.20 0 0 7.00 63.73 P
1002_f_at 3 2 16 16 14 0.19 -0.29 0 0 1.50 81.77 A
1003_s_at 7 3 16 16 15 0.44 0.23 0 0 2.33 7.04 A
1004_at 5 6 16 16 15 0.31 -0.11 0 0 0.83 9.80 A
1005_at 16 0 16 16 16 1.00 5.82 0 0 Undef 7037.95 P
1006_at 5 5 16 16 15 0.31 -1.27 0 0 1.00 -8.90 A
1007_s_at 9 1 16 16 15 0.56 3.51 0 0 9.00 470.81 P
1008_f_at 7 1 16 16 15 0.44 1.35 0 0 7.00 275.06 P
1009_at 12 0 16 16 15 0.75 4.76 0 0 Undef 1447.56 P
100_g_at 5 2 16 16 14 0.31 0.18 0 0 2.50 23.67 A
1010_at 3 6 16 16 14 0.19 -0.93 0 0 0.50 -7.83 A
1011_s_at 15 0 16 16 14 0.94 5.17 0 0 Undef 466.84 P
1012_at 4 4 16 16 14 0.25 0.44 0 0 1.00 -2.52 A
1013_at 7 0 16 16 16 0.44 1.92 0 0 Undef 38.79 P
1014_at 7 1 16 16 14 0.44 1.47 0 0 7.00 42.87 P
1015_s_at 3 6 16 16 14 0.19 0.16 0 0 0.50 -35.35 A
1016_s_at 1 3 16 16 15 0.06 -1.00 0 0 0.33 12.09 A
1017_at 7 1 16 16 15 0.44 2.09 0 0 7.00 46.04 P
1018_at 2 4 16 16 15 0.12 -0.41 0 0 0.50 -73.19 A

Total number of rows: 12600

Table truncated, full table size 622 Kbytes.




Supplementary file Size Download File type/resource
GSM2851.CEL.gz 3.1 Mb (ftp)(http) CEL

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