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Sample GSM28540 Query DataSets for GSM28540
Status Public on Feb 09, 2005
Title LPS 2hr Rat #2 fluor
Sample type RNA
 
Channel 1
Source name Control Pool 2hr LPS
Organism Rattus norvegicus
Extracted molecule total RNA
 
Channel 2
Source name LPS 2hr Rat #2
Organism Rattus norvegicus
Extracted molecule total RNA
 
 
Description LPS 2hr Rat #2 fluor
 
Submission date Aug 10, 2004
Last update date May 27, 2005
Contact name Rick David Fannin
E-mail(s) fannin@niehs.nih.gov
Phone 919-541-0992
Fax 919-541-1506
URL http://www.niehs.nih.gov/nct/
Organization name The National Institute of Environmental Health Sciences
Department Office of the Director
Lab National Center for Toxicogenomics/Toxicology-Pathology Working
Street address 111 T.W. Alexander Drive
City Durham
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1344
Series (1)
GSE1658 LPS Blood Time course

Data table header descriptions
ID_REF
SR_top Bonding box location in Red channel image coordinates - (top) (SR -- Sample in Red channel)
SR_left Bonding box location in Red channel image coordinates - (left) (SR -- Sample in Red channel)
SR_bottom Bonding box location in Red channel image coordinates - (bottom) (SR -- Sample in Red channel
SR_right Bonding box location in Red channel image coordinates - (right) (SR -- Sample in Red channel
SR_T. Int. Total intensity
SR_Mean Mean intensity
SR_S.Dev Standard deviation of intensity
SR_SNR Signal-to-noise ratio
SR_iQuality Quality index (0 -bad, to 1, good)
SR_bkMean Mean background intensity
SR_bkDev Standard deviation of background intensity
SG_top Bonding box location in Green channel image coordinates - (top) (SG -- Sample in Green channel
SG_left Bonding box location in Green channel image coordinates - (left) (SG -- Sample in Green channel
SG_bottom Bonding box location in Green channel image coordinates - (bottom) (SG -- Sample in Green channel
SG_right Bonding box location in Green channel image coordinates - (right) (SG -- Sample in Green channel
SG_T. Int. Total intensity
SG_Mean Mean intensity
SG_S.Dev Standard deviation of intenstiy
SG_SNR Signal-to-noise ration
SG_iQuality Quality measurement (0-bad, to 1, good)
SG_bkMean Mean background
SG_bkDev Standard deviation of background
unionArea Detected target area
propArea Propositional area relative to the mask size
VALUE log ratio (log2 of PRE_VALUE)
rQuality Ratio measurement quality
confLevel confidence level
lowerLimit of confidence level
upperLimit of confidence level
M Magnitude parameter for channel compensation
CV Coefficient of variance of the intensity
Flag User flagged: 0 - detected spot by user; 1- good spot
HKFlag House keeping flag
GelBand Number of bands
PRE_VALUE calibrated ratio

Data table
ID_REF SR_top SR_left SR_bottom SR_right SR_T. Int. SR_Mean SR_S.Dev SR_SNR SR_iQuality SR_bkMean SR_bkDev SG_top SG_left SG_bottom SG_right SG_T. Int. SG_Mean SG_S.Dev SG_SNR SG_iQuality SG_bkMean SG_bkDev unionArea propArea VALUE rQuality confLevel lowerLimit upperLimit M CV Flag HKFlag GelBand PRE_VALUE
1 623 179 650 206 108146 212 141.2 16 1 397.5 6.6 623 179 650 206 116136 233.1 146.8 15 1 426.6 7.3 175 0.8102 -0.8094483 1 99 0.704 1.4204 1.594 0.0939 1 0 1 0.5706
2 621 627 648 654 67640 56 53.6 4.4 0.7173 410.6 8.2 621 627 648 654 73240 80.4 53.3 5.5 1 433.7 9.6 141 0.8011 -1.1942953 0.7 99 0.704 1.4204 1.594 0.0939 1 0 1 0.437
3 623 1083 650 1110 561699 2424.6 1781 203.5 1 410.1 8.6 623 1083 650 1110 354066 1367.3 949.1 104.9 1 428.6 8.7 195 1 0.1538053 1 99 0.704 1.4204 1.594 0.0939 1 0 1 1.1125
4 619 1531 646 1558 1698588 8812.9 3522.1 789.1 1 408.1 8 619 1531 646 1558 698098 3273 1293.2 264.6 1 426.2 8.7 184 1 0.7563403 1 99 0.704 1.4204 1.594 0.0939 1 0 1 1.6892
5 623 235 650 262 585273 2214.5 1956.7 166.8 1 396 6.5 623 235 650 262 403058 1385.2 1167.2 86.5 1 425 8.3 216 1 0.0041783 1 99 0.704 1.4204 1.594 0.0939 1 0 1 1.0029
6 621 683 648 710 441170 2070.3 1384.3 159.7 1 412.2 8.7 621 683 648 710 391532 1776.8 1112.1 118.3 1 437 10.3 176 1 -0.4522543 1 99 0.704 1.4204 1.594 0.0939 1 0 1 0.7309
7 623 1139 650 1166 429466 1784.5 1196.2 158.3 1 408.3 7.7 623 1139 650 1166 340670 1321.9 857.7 105.3 1 427.5 8 194 0.9949 -0.2399073 1 99 0.704 1.4204 1.594 0.0939 1 0 1 0.8468
8 619 1587 646 1614 372233 1619.9 658.6 148.5 1 404.6 7.6 619 1587 646 1614 324880 1345.8 540.1 103.9 1 426.5 9.5 184 1 -0.4052603 1 99 0.704 1.4204 1.594 0.0939 1 0 1 0.7551
9 623 291 650 318 1719698 7367.8 5781.2 542.2 1 398.6 7.2 623 291 650 318 910118 3687.4 2884.8 231.1 1 427.5 8.2 216 1 0.3259623 1 99 0.704 1.4204 1.594 0.0939 1 0 1 1.2535
10 621 739 648 766 526562 2531.5 1476.5 187.5 1 416.5 9.5 621 739 648 766 406747 1839.1 974.2 124.4 1 439.3 10 176 1 -0.2117323 1 99 0.704 1.4204 1.594 0.0939 1 0 1 0.8635
11 623 1195 650 1222 1266141 6123.9 3157.3 530.2 1 408.6 8.1 623 1195 650 1222 639704 2878.5 1393 221.4 1 429.1 8.7 195 1 0.4164073 1 99 0.704 1.4204 1.594 0.0939 1 0 1 1.3346
12 619 1643 646 1670 457734 2092.1 1173.8 192.7 1 404.1 7.5 619 1643 646 1670 327650 1343.9 714.7 107.1 1 425.6 8.9 184 1 -0.0341603 1 99 0.704 1.4204 1.594 0.0939 1 0 1 0.9766
13 623 347 650 374 376729 1329.9 931.3 97.3 1 399.1 7.3 623 347 650 374 294785 939 667 59.7 1 426.3 7.8 213 0.9861 -0.1705563 1 99 0.704 1.4204 1.594 0.0939 1 0 1 0.8885
14 621 795 648 822 587851 2902.4 1852.3 226.3 1 411.3 8.5 621 795 648 822 459109 2140.7 1380.1 147.3 1 437.5 9.6 176 1 -0.2334473 1 99 0.704 1.4204 1.594 0.0939 1 0 1 0.8506
15 623 1251 650 1278 648908 2867.3 1773.2 249.9 1 408.1 8 623 1251 650 1278 427877 1737.3 1001.8 134.9 1 427.1 8.5 195 1 0.0500493 1 99 0.704 1.4204 1.594 0.0939 1 0 1 1.0353
16 619 1699 646 1726 473905 2160.8 659 201 1 403 7.4 619 1699 646 1726 334589 1371.3 430.1 109.8 1 423.7 8.8 184 1 -0.0166873 1 99 0.704 1.4204 1.594 0.0939 1 0 1 0.9885
17 623 402 650 429 3140764 13508.1 10848.8 973.4 1 400.7 7.7 623 402 650 429 1965946 8330.6 6474.9 523.5 1 427 8.2 216 1 0.0246033 1 99 0.704 1.4204 1.594 0.0939 1 0 1 1.0172
18 621 850 648 877 320273 1372.6 900.7 110.8 1 407.5 7.8 621 850 648 877 270841 1064.4 695.4 72 1 431 10 176 1 -0.3057883 1 99 0.704 1.4204 1.594 0.0939 1 0 1 0.809
19 623 1306 650 1333 180834 741 496.3 63.3 1 410 8.3 623 1306 650 1333 143918 490.2 323.3 36.7 1 427.3 9.3 157 0.8051 -0.0767373 1 99 0.704 1.4204 1.594 0.0939 1 0 1 0.9482
20 619 1754 646 1781 364926 1522.9 1146.7 140.4 1 405.6 7.5 619 1754 646 1781 267116 1002.6 743 80.6 1 423.9 8.8 184 1 -0.0696033 1 99 0.704 1.4204 1.594 0.0939 1 0 1 0.9529

Total number of rows: 7200

Table truncated, full table size 1253 Kbytes.




Supplementary file Size Download File type/resource
GSM28540.TIF.gz 9.4 Mb (ftp)(http) TIFF

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