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Sample GSM2892308 Query DataSets for GSM2892308
Status Public on Mar 18, 2019
Title Peyer's Patches F WT E09
Sample type RNA
 
Source name Peyer's Patch/Ileum
Organism Mus musculus
Characteristics age: 6 weeks
genotype: FIRE +/+
Sex: Female
strain: C57BL/6J/CBA
tissue: Peyer's Patches/Ileum
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA followed by purification with Rneasy Mini kit
Label Biotin
Label protocol GeneChip Whole Transcript Labeling Kit (Applied Biosystems)
 
Hybridization protocol GeneTitan
Scan protocol GeneChip Command Console
Description Gene expression data from Peyer's Patches/Ileum
Data processing CEL files were normalised (RMA) in R/Bioconductor.
 
Submission date Dec 18, 2017
Last update date Mar 18, 2019
Contact name Clare Pridans
E-mail(s) clare.pridans@ed.ac.uk
Organization name Centre for Inflammation Research
Department University of Edinburgh
Street address 47 Little France Crescent
City Edinburgh
ZIP/Postal code EH16 4TJ
Country United Kingdom
 
Platform ID GPL11533
Series (1)
GSE108207 Expression data from FIRE deficient mice

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
10344614 3.961025
10344616 1.257513
10344620 2.168001
10344622 3.280921
10344624 10.1677
10344633 7.672341
10344637 7.197926
10344653 3.067982
10344658 6.80523
10344674 2.264018
10344679 4.268068
10344707 7.41888
10344713 9.782043
10344715 2.302118
10344717 2.035677
10344719 3.174166
10344721 1.584616
10344723 5.394961
10344725 6.278077
10344741 9.357605

Total number of rows: 35556

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM2892308_Titan_EG0109_11012HD_E09_F_WT.CEL.gz 3.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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