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Sample GSM291546 Query DataSets for GSM291546
Status Public on Jan 07, 2009
Title MCF7_FAIRE_2
Sample type genomic
 
Source name MCF7
Organism Homo sapiens
Characteristics MCF7
Growth protocol MCF7 cells were grown in DMEM and LNCaP cells in RPMI. Media were supplemented with 10% FBS.
Extracted molecule genomic DNA
Extraction protocol Cells were cross-linked with 1% formaldehyde and processed as in (Nagy et al. 2003; Hogan et al. 2006)
Label biotin
Label protocol Standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Scanned at the Dana-Farber microarray core facility
Description Chromatin structure was analyzed in MCF7 and LNCaP cells using Formaldehyde-Assisted Isolation of Regulatory Elements (FAIRE) (Nagy et al. 2003; Hogan et al. 2006)
Data processing Model-based analysis of tiling array (MAT), chip.dfci.harvard.edu/~wli/MAT/
 
Submission date May 28, 2008
Last update date Jan 07, 2009
Contact name Jérôme Eeckhoute
E-mail(s) jerome.eeckhoute@inserm.fr
Organization name CNRS
Lab INSERM UMR 1011, Université Lille-Nord de France
Street address Bâtiment J&K, Faculté de Médecine de Lille-Pôle Recherche, Boulevard du Professeur Leclerc
City Lille
ZIP/Postal code 59045
Country France
 
Platform ID GPL4915
Series (1)
GSE11579 FAIRE-chip in MCF7 and LNCaP

Supplementary file Size Download File type/resource
GSM291546.CEL.gz 25.8 Mb (ftp)(http) CEL
Processed data are available on Series record

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