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Sample GSM296608 Query DataSets for GSM296608
Status Public on May 20, 2009
Title K562_ICL670_untreated_dup1
Sample type RNA
 
Source name Mock
Organism Homo sapiens
Characteristics Human myeloid leukemia cell line
Treatment protocol Mock
Extracted molecule total RNA
Extraction protocol RNeasy kit
Label Biotin
Label protocol One-cycle Target Labeling GeneChip Expression Analysis Technical Mannual, 701021 Rev.5 Section 2 Eukaryotic Sample and Array processing Chapter 1 Eukaryotic Target Prepartion
 
Hybridization protocol GeneChip Expression Analysis Technical Mannual, 701021 Rev.5 Hybridization Oven 640 110V (Affymetrix 800138) Wash and staining: Fluidics Station 450 (Affymetrix 00-0079)
Scan protocol GeneChip Scanner 3000 (Affymetrix 00-0074) GeneChip Operating Software ver.1.4 (Affymetrix 690036)
Description Description Effect of ICL670 in K562 cells
Data processing Data Processing GeneChip Operating Software ver.1.4 (Affymetrix 690036)
 
Submission date Jun 04, 2008
Last update date May 20, 2009
Contact name Junko H Ohyashiki
E-mail(s) junko@hh.iij4u.or.jp
Phone +81-3-3342-6111(ext.5999)
Fax +81-3-5381-6651
Organization name Tokyo Medical University
Department Intractable Immune System Diseases Research Center
Street address 6-7-1, Nishishinjuku, Shinjuku-ku
City Tokyo
ZIP/Postal code 160-0023
Country Japan
 
Platform ID GPL570
Series (1)
GSE11670 Transcriptional profiling of ICL670 treated K562 cells

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL P: present, M: marginal. A: absent
DETECTION_P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION_P-VALUE
AFFX-BioB-5_at 661.9 P 0.000662
AFFX-BioB-M_at 857.6 P 0.000052
AFFX-BioB-3_at 580.3 P 0.000081
AFFX-BioC-5_at 1995 P 0.000052
AFFX-BioC-3_at 2907.2 P 0.000052
AFFX-BioDn-5_at 4626.5 P 0.000044
AFFX-BioDn-3_at 8861.6 P 0.00007
AFFX-CreX-5_at 24903.4 P 0.000052
AFFX-CreX-3_at 28974.8 P 0.000044
AFFX-DapX-5_at 1340.6 P 0.000044
AFFX-DapX-M_at 2743.6 P 0.00039
AFFX-DapX-3_at 3962.1 P 0.000044
AFFX-LysX-5_at 187.1 P 0.000044
AFFX-LysX-M_at 294.7 P 0.001796
AFFX-LysX-3_at 619.7 P 0.000095
AFFX-PheX-5_at 333.6 P 0.00007
AFFX-PheX-M_at 361.1 P 0.00011
AFFX-PheX-3_at 418.9 P 0.00006
AFFX-ThrX-5_at 330.1 P 0.00007
AFFX-ThrX-M_at 521.6 P 0.000044

Total number of rows: 54675

Table truncated, full table size 1431 Kbytes.




Supplementary file Size Download File type/resource
GSM296608.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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