|
| Status |
Public on Dec 06, 2002 |
| Title |
M7TW01010684 |
| Sample type |
RNA |
| |
|
| Source name |
mammary gland
|
| Organism |
Mus musculus |
| Extracted molecule |
total RNA |
| Extraction protocol |
as per manufacturer's instructions
|
| Label protocol |
as per manufacturer's instructions
|
| |
|
| Hybridization protocol |
as per manufacturer's instructions
|
| Scan protocol |
as per manufacturer's instructions
|
| Description |
Large-scale analysis of the mouse transcriptome.
mammary gland from females with E18 embyros
C57BL/6L, female, 8-11 weeks
Analyzed using the Affymetrix MAS4 algorithm.
Background: Avg: 255.59 Stdv: 10.11 Min: 238.50 Max: 271.99
|
| |
|
| Submission date |
Nov 22, 2002 |
| Last update date |
Dec 14, 2006 |
| Contact name |
John R Walker |
| E-mail(s) |
jwalker@gnf.org
|
| Phone |
858-812-1636
|
| Organization name |
Genomics Institute of the Novartis Research Foundation
|
| Lab |
Genetics Core
|
| Street address |
10675 John Jay Hopkins
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121 |
| Country |
USA |
| |
|
| Platform ID |
GPL32 |
| Series (1) |
| GSE97 |
Large-scale analysis of the mouse transcriptome |
|
| Data table header descriptions |
| ID_REF |
Affymetrix Probe Set Identifier |
| Positive |
Number of positive probe pairs |
| Negative |
Number of negative probe pairs |
| Pairs |
Number of probe set specific probe pairs on the array |
| Pairs_Used |
Pairs used |
| Pairs_InAvg |
|
| Pos_Fraction |
Positive/Pairs_Used |
| Log_Avg |
Log average |
| PM_Excess |
Number of probe pairs where PM/MM exceeds the ratio limit (10 by default) |
| MM_Excess |
Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default) |
| Pos/Neg |
Positive/Negative |
| VALUE |
Average Difference Intensity |
| ABS_CALL |
Whether a probe set is present, marginal, or absent |
