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Sample GSM297692 Query DataSets for GSM297692
Status Public on Jun 11, 2008
Title 1M Control 6
Sample type RNA
 
Source name Retina, 1 M Control
Organism Rattus norvegicus
Characteristics Sprague Dawley, male, retina
Extracted molecule total RNA
Extraction protocol Tri-Reagent/BCP ( Molecular Research Center, Cincinnati, OH ). Cleanup with Qiagen ( Valencia, CA ) Rneasy final step
Label Alexa-647 Streptavidin
Label protocol Biotin-labeled cRNA was prepared by linear amplification of the Poly(A)+ RNA population within the total RNA sample
 
Hybridization protocol Arrays were hybridized at 37C for 18h in a shaking incubator.
Scan protocol Arrays were scanned with Axon GenePixPro 4000B (Molecular Devices, Axon Instruments, Union City, CA).
Description Retina, control sample for 1 month post streptozotocin injection experiment
Data processing Raw values represent the final number of the spot after background is subtracted out. Normalized values represent median global normalization method, i.e. raw intensity/median intensity of all spots on the array
 
Submission date Jun 10, 2008
Last update date Jun 10, 2008
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL2896
Series (1)
GSE11733 Whole genome microarray of the retina reveals a progressive response with increasing duration of diabetes.

Data table header descriptions
ID_REF Array specific number based on location of probe
VALUE Normalized signal - raw number/median of all spots on the array

Data table
ID_REF VALUE
1002 0.533919492
1004 1.096768012
1005 28.41154131
1006 5.179418048
1009 3.485632999
1010 0.296131861
1011 1.912654003
1012 1.479431987
1013 11.18554078
1016 0.84010158
1017 0.28364128
1018 0.581882464
1019 0.180596008
1020 18.54594636
1023 1.671772512
1024 0.28282549
1025 1.451195422
1026 3.52536767
1027 2.473920299
1030 0.038139678

Total number of rows: 33911

Table truncated, full table size 614 Kbytes.




Supplementary file Size Download File type/resource
GSM297692.txt.gz 829.5 Kb (ftp)(http) TXT
Processed data included within Sample table
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