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Sample GSM297693 Query DataSets for GSM297693
Status Public on Jun 11, 2008
Title 1M STZ 1
Sample type RNA
 
Source name Retina, 1 M STZ
Organism Rattus norvegicus
Characteristics Sprague Dawley, male, retina
Extracted molecule total RNA
Extraction protocol Tri-Reagent/BCP ( Molecular Research Center, Cincinnati, OH ). Cleanup with Qiagen ( Valencia, CA ) Rneasy final step
Label Alexa-647 Streptavidin
Label protocol Biotin-labeled cRNA was prepared by linear amplification of the Poly(A)+ RNA population within the total RNA sample
 
Hybridization protocol Arrays were hybridized at 37C for 18h in a shaking incubator.
Scan protocol Arrays were scanned with Axon GenePixPro 4000B (Molecular Devices, Axon Instruments, Union City, CA).
Description Retina, experimental sample for 1 month post streptozotocin injection experiment
Data processing Raw values represent the final number of the spot after background is subtracted out. Normalized values represent median global normalization method, i.e. raw intensity/median intensity of all spots on the array
 
Submission date Jun 10, 2008
Last update date Jun 10, 2008
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL2896
Series (1)
GSE11733 Whole genome microarray of the retina reveals a progressive response with increasing duration of diabetes.

Data table header descriptions
ID_REF Array specific number based on location of probe
VALUE Normalized signal - raw number/median of all spots on the array

Data table
ID_REF VALUE
1002 0.581481491
1004 0.837576928
1005 31.2849119
1006 5.46242647
1009 2.925085316
1010 0.372518561
1011 1.669942702
1012 2.143342447
1013 9.870182414
1016 0.865922132
1017 0.256360538
1018 0.661850763
1019 0.164725644
1020 18.76380956
1023 1.48836725
1024 0.185045535
1025 1.334793141
1026 3.156463651
1027 3.401558592
1030 0.069649227

Total number of rows: 33911

Table truncated, full table size 614 Kbytes.




Supplementary file Size Download File type/resource
GSM297693.txt.gz 835.0 Kb (ftp)(http) TXT
Processed data included within Sample table
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