NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM297694 Query DataSets for GSM297694
Status Public on Jun 11, 2008
Title 1M STZ 2
Sample type RNA
 
Source name Retina, 1 M STZ
Organism Rattus norvegicus
Characteristics Sprague Dawley, male, retina
Extracted molecule total RNA
Extraction protocol Tri-Reagent/BCP ( Molecular Research Center, Cincinnati, OH ). Cleanup with Qiagen ( Valencia, CA ) Rneasy final step
Label Alexa-647 Streptavidin
Label protocol Biotin-labeled cRNA was prepared by linear amplification of the Poly(A)+ RNA population within the total RNA sample
 
Hybridization protocol Arrays were hybridized at 37C for 18h in a shaking incubator.
Scan protocol Arrays were scanned with Axon GenePixPro 4000B (Molecular Devices, Axon Instruments, Union City, CA).
Description Retina, experimental sample for 1 month post streptozotocin injection experiment
Data processing Raw values represent the final number of the spot after background is subtracted out. Normalized values represent median global normalization method, i.e. raw intensity/median intensity of all spots on the array
 
Submission date Jun 10, 2008
Last update date Jun 10, 2008
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL2896
Series (1)
GSE11733 Whole genome microarray of the retina reveals a progressive response with increasing duration of diabetes.

Data table header descriptions
ID_REF Array specific number based on location of probe
VALUE Normalized signal - raw number/median of all spots on the array

Data table
ID_REF VALUE
1002 0.52621382
1004 0.863141529
1005 34.20702172
1006 6.465442497
1009 3.065419107
1010 0.315288023
1011 1.935833045
1012 2.441659366
1013 10.25618252
1016 1.015195862
1017 0.223563366
1018 0.6176343
1019 0.149251055
1020 17.32519133
1023 1.486803261
1024 0.237648636
1025 1.214460011
1026 3.557920476
1027 3.264728458
1030 0.06502329

Total number of rows: 33911

Table truncated, full table size 614 Kbytes.




Supplementary file Size Download File type/resource
GSM297694.txt.gz 833.7 Kb (ftp)(http) TXT
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap