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Sample GSM297696 Query DataSets for GSM297696
Status Public on Jun 11, 2008
Title 1M STZ 4
Sample type RNA
 
Source name Retina, 1 M STZ
Organism Rattus norvegicus
Characteristics Sprague Dawley, male, retina
Extracted molecule total RNA
Extraction protocol Tri-Reagent/BCP ( Molecular Research Center, Cincinnati, OH ). Cleanup with Qiagen ( Valencia, CA ) Rneasy final step
Label Alexa-647 Streptavidin
Label protocol Biotin-labeled cRNA was prepared by linear amplification of the Poly(A)+ RNA population within the total RNA sample
 
Hybridization protocol Arrays were hybridized at 37C for 18h in a shaking incubator.
Scan protocol Arrays were scanned with Axon GenePixPro 4000B (Molecular Devices, Axon Instruments, Union City, CA).
Description Retina, experimental sample for 1 month post streptozotocin injection experiment
Data processing Raw values represent the final number of the spot after background is subtracted out. Normalized values represent median global normalization method, i.e. raw intensity/median intensity of all spots on the array
 
Submission date Jun 10, 2008
Last update date Jun 10, 2008
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL2896
Series (1)
GSE11733 Whole genome microarray of the retina reveals a progressive response with increasing duration of diabetes.

Data table header descriptions
ID_REF Array specific number based on location of probe
VALUE Normalized signal - raw number/median of all spots on the array

Data table
ID_REF VALUE
1002 0.687896421
1004 0.973128319
1005 36.1152299
1006 4.931472045
1009 3.568140262
1010 0.423111475
1011 1.836586773
1012 1.970939369
1013 12.22013095
1016 0.881367257
1017 0.232107142
1018 0.531027568
1019 0.18915901
1020 22.17247622
1023 1.977302798
1024 0.219059604
1025 1.409153638
1026 3.012482506
1027 2.612018455
1030 0.044307984

Total number of rows: 33911

Table truncated, full table size 614 Kbytes.




Supplementary file Size Download File type/resource
GSM297696.txt.gz 832.0 Kb (ftp)(http) TXT
Processed data included within Sample table
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