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Sample GSM297700 Query DataSets for GSM297700
Status Public on Jun 11, 2008
Title 3M Control 2
Sample type RNA
 
Source name Retina, 3 M Control
Organism Rattus norvegicus
Characteristics Sprague Dawley, male, retina
Extracted molecule total RNA
Extraction protocol Tri-Reagent/BCP ( Molecular Research Center, Cincinnati, OH ). Cleanup with Qiagen ( Valencia, CA ) Rneasy final step
Label Alexa-647 Streptavidin
Label protocol Biotin-labeled cRNA was prepared by linear amplification of the Poly(A)+ RNA population within the total RNA sample
 
Hybridization protocol Arrays were hybridized at 37C for 18h in a shaking incubator.
Scan protocol Arrays were scanned with Axon GenePixPro 4000B (Molecular Devices, Axon Instruments, Union City, CA).
Description Retina, control sample for 3 month post streptozotocin injection experiment
Data processing Raw values represent the final number of the spot after background is subtracted out. Normalized values represent median global normalization method, i.e. raw intensity/median intensity of all spots on the array
 
Submission date Jun 10, 2008
Last update date Jun 10, 2008
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL2896
Series (1)
GSE11733 Whole genome microarray of the retina reveals a progressive response with increasing duration of diabetes.

Data table header descriptions
ID_REF Array specific number based on location of probe
VALUE Normalized signal - raw number/median of all spots on the array

Data table
ID_REF VALUE
1002 0.180812429
1004 0.408397679
1005 10.08590812
1006 1.905379861
1009 1.093788202
1010 0.288449384
1011 0.194625718
1012 0.699656007
1013 3.411546074
1016 0.27598765
1017 0.573003793
1018 0.084155837
1019 0.396362939
1020 3.038601809
1023 0.494989221
1024 0.997756198
1025 0.585646506
1026 1.159001842
1027 0.909601127
1030 0.869711528

Total number of rows: 33911

Table truncated, full table size 614 Kbytes.




Supplementary file Size Download File type/resource
GSM297700.txt.gz 829.3 Kb (ftp)(http) TXT
Processed data included within Sample table
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