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Sample GSM297702 Query DataSets for GSM297702
Status Public on Jun 11, 2008
Title 3M Control 4
Sample type RNA
 
Source name Retina, 3 M Control
Organism Rattus norvegicus
Characteristics Sprague Dawley, male, retina
Extracted molecule total RNA
Extraction protocol Tri-Reagent/BCP ( Molecular Research Center, Cincinnati, OH ). Cleanup with Qiagen ( Valencia, CA ) Rneasy final step
Label Alexa-647 Streptavidin
Label protocol Biotin-labeled cRNA was prepared by linear amplification of the Poly(A)+ RNA population within the total RNA sample
 
Hybridization protocol Arrays were hybridized at 37C for 18h in a shaking incubator.
Scan protocol Arrays were scanned with Axon GenePixPro 4000B (Molecular Devices, Axon Instruments, Union City, CA).
Description Retina, control sample for 3 month post streptozotocin injection experiment
Data processing Raw values represent the final number of the spot after background is subtracted out. Normalized values represent median global normalization method, i.e. raw intensity/median intensity of all spots on the array
 
Submission date Jun 10, 2008
Last update date Jun 10, 2008
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL2896
Series (1)
GSE11733 Whole genome microarray of the retina reveals a progressive response with increasing duration of diabetes.

Data table header descriptions
ID_REF Array specific number based on location of probe
VALUE Normalized signal - raw number/median of all spots on the array

Data table
ID_REF VALUE
1002 0.613916384
1004 0.730421291
1005 20.56500499
1006 3.423928332
1009 1.753275722
1010 0.701275736
1011 0.623917833
1012 1.665127604
1013 6.957541827
1016 0.516411193
1017 0.838454643
1018 0.274733282
1019 0.703964829
1020 6.908858736
1023 1.033197071
1024 0.828222031
1025 0.964076697
1026 2.362489793
1027 1.379886553
1030 0.755404262

Total number of rows: 33911

Table truncated, full table size 614 Kbytes.




Supplementary file Size Download File type/resource
GSM297702.txt.gz 827.6 Kb (ftp)(http) TXT
Processed data included within Sample table
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