NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM297705 Query DataSets for GSM297705
Status Public on Jun 11, 2008
Title 3M STZ 1
Sample type RNA
 
Source name Retina, 3 M STZ
Organism Rattus norvegicus
Characteristics Sprague Dawley, male, retina
Extracted molecule total RNA
Extraction protocol Tri-Reagent/BCP ( Molecular Research Center, Cincinnati, OH ). Cleanup with Qiagen ( Valencia, CA ) Rneasy final step
Label Alexa-647 Streptavidin
Label protocol Biotin-labeled cRNA was prepared by linear amplification of the Poly(A)+ RNA population within the total RNA sample
 
Hybridization protocol Arrays were hybridized at 37C for 18h in a shaking incubator.
Scan protocol Arrays were scanned with Axon GenePixPro 4000B (Molecular Devices, Axon Instruments, Union City, CA).
Description Retina, experimental sample for 3 month post streptozotocin injection experiment
Data processing Raw values represent the final number of the spot after background is subtracted out. Normalized values represent median global normalization method, i.e. raw intensity/median intensity of all spots on the array
 
Submission date Jun 10, 2008
Last update date Jun 10, 2008
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL2896
Series (1)
GSE11733 Whole genome microarray of the retina reveals a progressive response with increasing duration of diabetes.

Data table header descriptions
ID_REF Array specific number based on location of probe
VALUE Normalized signal - raw number/median of all spots on the array

Data table
ID_REF VALUE
1002 0.25254053
1004 0.830166315
1005 32.72694687
1006 4.057600376
1009 2.261091002
1010 0.454719357
1011 0.82751039
1012 2.179612866
1013 9.373068093
1016 0.616478185
1017 0.662792084
1018 0.344995801
1019 0.516755477
1020 11.30082956
1023 1.228398539
1024 0.717678548
1025 1.067657451
1026 3.588230821
1027 1.571174431
1030 0.672742355

Total number of rows: 33911

Table truncated, full table size 614 Kbytes.




Supplementary file Size Download File type/resource
GSM297705.txt.gz 831.2 Kb (ftp)(http) TXT
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap