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Status |
Public on Jun 13, 2018 |
Title |
activin/RA-treated AC_ERK3 MO1/2 |
Sample type |
RNA |
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Source name |
activin/RA-treated ACs injected with ERK3 MO1/2, stage 15
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Organism |
Xenopus laevis |
Characteristics |
tissue: animal cap developmental stage: 15 injected mo: ERK3 MO1/2 treatment: activin/RA
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Treatment protocol |
Control MO (80 ng), ERK3 MO1/2 (40 ng each of MO1 and MO2), or ERK3 MO3 (80 ng) were injected into the animal regions of all blastomeres at the 4-cell stage. The animal caps were dissected from the injected embryos at stage 9, cultured alone or in the presence of activin plus retinoic acid (activin/RA), and harvested at stage 15.
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Growth protocol |
Xenopus laevis embryos were obtained by in vitro fertilization and cultured in 0.1x MBS.
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Extracted molecule |
total RNA |
Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
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Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared from 250 ng total RNA using the GeneChip 3’ IVT Express Kit (Affymetrix) according to the manufacturer’s instruction.
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Hybridization protocol |
Following fragmentation, 12 ug of cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Xenopus laevis Genome 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Styation 450.
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Scan protocol |
GeneChips were scanned using an Affymetrix GeneChip Scanner.
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Description |
Kidney_AB_15 ERK3 MO1/2 (40 ng each of MO1 and MO2) were injected into the animal regions of all blastomeres at the 4-cell stage. The animal caps were dissected from the injected embryos at stage 9, cultured in the presence of activin plus retinoic acid (activin/RA), and harvested at stage 15.
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Data processing |
The data were analyzed with GeneSpring GX (Agilent Technologies).
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Submission date |
Feb 09, 2018 |
Last update date |
Jun 13, 2018 |
Contact name |
Eisuke Nishida |
E-mail(s) |
nishida@lif.kyoto-u.ac.jp
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Phone |
+81-75-753-4230
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Organization name |
Graduate School of Biostudies, Kyoto University
|
Department |
Department of Cell and Developmental Biology
|
Street address |
Kitashirakawa, Sakyo-ku
|
City |
Kyoto |
ZIP/Postal code |
606-8502 |
Country |
Japan |
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|
Platform ID |
GPL10756 |
Series (2) |
GSE110427 |
ERK3 is essential for establishment of epithelial architecture [ERK3 KD] |
GSE110429 |
ERK3 is essential for establishment of epithelial architecture |
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