|
| Status |
Public on Jul 16, 2008 |
| Title |
Animal#872 small intestine infected with Cooperia oncophora for 14 days |
| Sample type |
RNA |
| |
|
| Source name |
Animal#872 small intestine infected with Cooperia oncophora for 14 days
|
| Organism |
Bos taurus |
| Characteristics |
breed: Holstein
gender: male
tissue: small intestine
|
| Growth protocol |
normal Holstein bull calf (2 to 4 months old fed with hay)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol following by DNase digestion and Qiagen RNeasy purification
|
| Label |
Cy3
|
| Label protocol |
incorporation
|
| |
|
| Hybridization protocol |
single dye
|
| Scan protocol |
Axon GenePix 4000B at 5 uM resolution
|
| Description |
see Li & Li, BMC Genomics 2006, 7:234
|
| Data processing |
The data presented here are average fluorescent intensity from either 4 or 8 perfect match oligos that represent a single unique sequence. These data are usually log transformed and subject to quantile normalization method using the R package before analyzed. see Li & Li, BMC Genomics 2006, 7:234
|
| |
|
| Submission date |
Jul 01, 2008 |
| Last update date |
Sep 28, 2011 |
| Contact name |
Robert W Li |
| E-mail(s) |
robert.li@ars.usda.gov
|
| Phone |
301-504-5185
|
| Fax |
301-504-8414
|
| Organization name |
USDA
|
| Department |
Animal & Natural Resources Institute
|
| Lab |
Bovine Functional Genomics Laboratory
|
| Street address |
Barc East
|
| City |
Beltsville |
| State/province |
MD |
| ZIP/Postal code |
20705 |
| Country |
USA |
| |
|
| Platform ID |
GPL3301 |
| Series (2) |
| GSE11950 |
A temporal shift in regulatory networks and pathways in the bovine small intestine during Cooperia oncophora infection |
| GSE24402 |
The vitamin D receptor and inducible nitric oxide synthase associated pathways in the development of acquired resistance to Cooperia oncophora infection in cattle |
|
