|
| Status |
Public on Jun 21, 2022 |
| Title |
Nip-pa-R1 sRNA-seq |
| Sample type |
SRA |
| |
|
| Source name |
young panicle
|
| Organism |
Oryza sativa |
| Characteristics |
cultivar: japonica
tissue: panicle
genotype: control
|
| Growth protocol |
RIce plants grown in soil in Hannan province
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extrated using TRIzol method.
18-35nt small RNA was cut from PAGE gel.
|
| |
|
| Library strategy |
ncRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Description |
ck_24nt_map.txt
|
| Data processing |
Adapter sequences were trimed and clean reads with sizes ranging from 18 to 35 were mapped to TRAI10 using Bowtie with parameter -v 0 -k 10.
Annotated structure RNAs were excluded.
Read counts were normalized to RPTM.
Supplementary_files_format_and_content: tdf, map.txt
|
| |
|
| Submission date |
Mar 23, 2018 |
| Last update date |
Jun 21, 2022 |
| Contact name |
Lili Wang |
| E-mail(s) |
2014201023@njau.edu.cn
|
| Organization name |
Nanjing Agricultural University
|
| Street address |
Weigang No.1
|
| City |
Nanjing |
| ZIP/Postal code |
210095 |
| Country |
China |
| |
|
| Platform ID |
GPL23013 |
| Series (2) |
| GSE112257 |
Reinforcement of DNA methylation in CHH context through RNA-directed DNA methylation ensures sexual reproduction in rice [sRNA-Seq] |
| GSE112259 |
Reinforcement of DNA methylation in CHH context through RNA-directed DNA methylation ensures sexual reproduction in rice |
|
| Relations |
| BioSample |
SAMN08783747 |
| SRA |
SRX3837382 |
