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Sample GSM306797 Query DataSets for GSM306797
Status Public on Jul 13, 2009
Title 10168
Sample type RNA
 
Source name Whole Blood
Organism Homo sapiens
Characteristics Recipient Age: 60
Recipient Sex: F
Drug Regime: FK506 [Tacrolimus]
Donor Age: 60
Donor Sex: M
CAN Banff Score =3
CAN scores are representative of the severity of can (0-mild CAN; 1-moderate CAN, 2&3- severe CAN)
Treatment protocol N/A
Growth protocol Cells were not manipulated before RNA extraction
Extracted molecule total RNA
Extraction protocol RNA was extracted using Trizol and purified on RNeasy Columns for PBMC and Whole Blood RNA was extracted using the PaxGene Blood RNA system and Globin Transcripts reduced uisng GlobinClear
Label biotin
Label protocol Ambion MessageAmp Biotin II Enhanced
 
Hybridization protocol Standard Affymetrix 49 Format Hybridization with 15mg of fragmented cRNA
Scan protocol Affymetrix EukGE-WS2v4
Description RNA from Whole Blood of patients with Chronic Allograft Nephropathy or Well Functioning Kidney Transplants
Data processing RMAExpress
 
Submission date Jul 21, 2008
Last update date Nov 14, 2018
Contact name Sunil Kurian
E-mail(s) smkurian@scripps.edu
Phone 858-784-7759
Organization name The Scripps Research Institute
Department Molecular and Experimental Medicine
Street address 10550 N Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL570
Series (1)
GSE12187 Biomarkers for Early and Late Stage Chronic Allograft Nephropathy by Genomic Profiling of Peripheral Blood
Relations
Reanalyzed by GSE122511

Data table header descriptions
ID_REF
VALUE RMA Normalized Signals

Data table
ID_REF VALUE
1007_s_at 50.404
1053_at 79.363
117_at 498.148
121_at 87.425
1255_g_at 4.987
1294_at 172.134
1316_at 27.103
1320_at 7.622
1405_i_at 606.154
1431_at 5.622
1438_at 11.477
1487_at 80.977
1494_f_at 22.259
1552256_a_at 48.073
1552257_a_at 68.192
1552258_at 15.536
1552261_at 8.800
1552263_at 470.067
1552264_a_at 679.825
1552266_at 3.589

Total number of rows: 54675

Table truncated, full table size 940 Kbytes.




Supplementary file Size Download File type/resource
GSM306797.CEL.gz 7.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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