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Sample GSM30756 Query DataSets for GSM30756
Status Public on Sep 21, 2004
Title ENCODE: TAF1-HCT116 Rep3
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using TAF1 antibody
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Genome-wide location analysis of TAF1 binding at ENCODE regions in HCT116 cells. Replicate 3 of 3.
 
Submission date Sep 17, 2004
Last update date Nov 22, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE1778 ENCODE: GWLA of TAF1, RNA PolII binding in four cell lines

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
SIGNIFICANCE significance
P-VAL p-value calculated using single array error model
F635_INT F635 intensity with background intensity subtracted
F532_INT F532 intensity with background intensity subtracted
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
PRE_VALUE enrichment value (F635/F532)
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE SIGNIFICANCE P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG PRE_VALUE UNF_VALUE
1 0.6135323 0.2245 0.055001 532.5 348.69 600 620 272 67 89 74 407 414 115 158 161 44 0 1.53 0.6135323
2 0.3103403 0.1182 0.200015 632.5 509.51 706 719 324 73 96 87 517 530 167 155 158 44 0 1.24 0.3103403
3 0.1243283 0.0482 0.365629 1080.5 991.98 1156 1211 463 75 97 85 854 841 235 153 158 73 0 1.09 0.1243283
4 0.4750853 0.1822 0.097217 846.5 609.13 922 925 326 75 101 116 593 602 155 161 164 77 0 1.39 0.4750853
5 0.2868813 0.1096 0.217624 715.5 587.79 801 793 327 85 126 362 582 571 129 165 232 1199 0 1.22 0.2868813
6 0.2630343 0.1015 0.234936 608.5 506.66 682 723 293 73 99 97 529 521 134 169 179 142 0 1.20 0.2630343
7 0.5849633 0.2064 0.070879 342.5 227.71 416 463 241 73 102 140 331 341 88 167 170 53 0 1.50 0.5849633
8 -0.2009133 -0.0768 0.707814 687.5 788.46 771 780 345 83 111 155 721 714 179 163 178 339 0 0.87 -0.2009133
9 0.1505603 0.0562 0.344591 272.5 244.79 349 381 207 76 100 90 336 342 85 160 164 56 0 1.11 0.1505603
10 0.8953033 0.2773 0.024188 182.5 98.20 256 272 162 73 94 75 229 228 66 156 158 42 0 1.86 0.8953033
11 0.1505603 0.0554 0.346644 343.5 310.26 415 432 211 71 98 85 381 383 84 159 162 53 0 1.11 0.1505603
12 -0.0892673 -0.0344 0.596692 915.5 972.05 991 1005 335 75 98 83 844 867 161 157 162 46 0 0.94 -0.0892673
13 -0.0439433 -0.0159 0.545160 571.5 587.79 646 659 243 74 97 82 577 598 134 160 164 46 0 0.97 -0.0439433
14 0.1763233 0.0639 0.324661 584.5 519.47 657 724 367 72 96 84 524 528 147 155 158 45 0 1.13 0.1763233
15 0.7311833 0.2625 0.030817 502.5 303.14 576 583 267 73 103 161 376 375 98 159 163 47 0 1.66 0.7311833
16 0.5160153 0.1888 0.089404 550.5 385.69 627 669 310 76 101 85 436 445 123 161 163 46 0 1.43 0.5160153
17 -0.0892673 -0.0346 0.597274 560.5 596.33 629 636 298 68 94 82 584 590 139 161 164 45 0 0.94 -0.0892673
18 0.7990873 0.2689 0.027763 328.5 189.29 410 434 234 81 100 82 301 305 79 164 166 47 0 1.74 0.7990873
19 0.3219283 0.1257 0.185387 1601.5 1283.74 1681 1698 514 79 106 93 1062 1065 244 156 161 49 0 1.25 0.3219283
20 0.3895673 0.1506 0.141787 942.5 718.72 1015 1027 405 72 97 87 671 674 144 162 163 68 0 1.31 0.3895673

Total number of rows: 25392

Table truncated, full table size 2659 Kbytes.




Supplementary file Size Download File type/resource
GSM30756_cy3.tif.gz 54.3 Mb (ftp)(http) TIFF
GSM30756_cy5.tif.gz 55.9 Mb (ftp)(http) TIFF

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