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Sample GSM30762 Query DataSets for GSM30762
Status Public on Sep 21, 2004
Title ENCODE: TAF1-HeLa Rep1
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using TAF1 antibody
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Genome-wide location analysis of TAF1 binding at ENCODE regions in HeLa cells. Replicate 1 of 3.
 
Submission date Sep 17, 2004
Last update date Nov 22, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE1778 ENCODE: GWLA of TAF1, RNA PolII binding in four cell lines

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
SIGNIFICANCE significance
P-VAL p-value calculated using single array error model
F635_INT F635 intensity with background intensity subtracted
F532_INT F532 intensity with background intensity subtracted
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
PRE_VALUE enrichment value (F635/F532)
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE SIGNIFICANCE P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG PRE_VALUE UNF_VALUE
1 0.2387873 0.0956 0.254984 1275 1080.83 1362 1355 288 87 95 55 812 828 143 172 176 37 0 1.18 0.2387873
2 0.1634993 0.0654 0.325942 1617 1443.95 1704 1709 391 87 95 53 1020 998 266 167 173 37 0 1.12 0.1634993
3 0.0285693 0.0099 0.472855 3050 2998.71 3135 3097 661 85 95 57 1936 1949 416 171 173 34 0 1.02 0.0285693
4 0.0426443 0.0145 0.460164 1790 1745.70 1877 1951 501 87 103 82 1207 1132 263 177 183 52 0 1.03 0.0426443
5 0.2868813 0.1129 0.218256 1963 1611.02 2045 1927 573 82 98 72 1127 1121 330 176 182 47 0 1.22 0.2868813
6 0.2630343 0.1017 0.241647 1538 1283.70 1623 1675 615 85 97 56 931 947 309 172 174 37 0 1.20 0.2630343
7 0.3334243 0.1330 0.179587 1023 809.77 1111 1165 306 88 98 57 649 682 157 168 171 38 0 1.26 0.3334243
8 -0.2515393 -0.1021 0.759321 1380 1648.53 1468 1423 428 88 102 60 1145 1067 268 172 174 37 0 0.84 -0.2515393
9 -0.3584543 -0.1414 0.835231 910 1166.07 1001 1023 287 91 102 57 862 827 211 172 174 37 0 0.78 -0.3584543
10 0.4005383 0.1551 0.142445 476 359.71 569 568 203 93 100 57 388 398 90 171 172 35 0 1.32 0.4005383
11 -0.0740013 -0.0324 0.588496 1322 1397.92 1413 1476 331 91 102 58 1003 1008 185 177 177 35 0 0.95 -0.0740013
12 -0.3040063 -0.1220 0.799811 2937 3622.66 3028 3056 448 91 102 62 2312 2275 262 181 185 53 0 0.81 -0.3040063
13 -0.3584543 -0.1406 0.833754 1865 2383.29 1954 1890 536 89 102 63 1581 1520 340 177 182 51 0 0.78 -0.3584543
14 0.2868813 0.1139 0.216189 1556 1273.47 1645 1701 516 89 103 54 924 955 255 171 175 36 0 1.22 0.2868813
15 0.4114263 0.1616 0.132633 1326 997.30 1419 1413 372 93 107 65 759 751 185 168 173 43 0 1.33 0.4114263
16 0.1763233 0.0702 0.314149 1503 1331.44 1596 1630 354 93 102 54 956 945 191 169 171 37 0 1.13 0.1763233
17 -0.3584543 -0.1464 0.843603 1453 1873.56 1546 1577 334 93 101 56 1274 1245 206 169 171 36 0 0.78 -0.3584543
18 0.4114263 0.1555 0.141913 805 603.49 900 919 433 95 102 56 530 540 186 170 172 35 0 1.33 0.4114263
19 0.1763233 0.0696 0.315715 3664 3242.50 3760 3581 1338 96 104 56 2072 2039 650 164 165 37 0 1.13 0.1763233
20 0.0976113 0.0410 0.388729 2430 2265.66 2522 2510 347 92 103 60 1504 1501 225 169 171 37 0 1.07 0.0976113

Total number of rows: 25392

Table truncated, full table size 2679 Kbytes.




Supplementary file Size Download File type/resource
GSM30762_cy3.tif.gz 13.8 Mb (ftp)(http) TIFF
GSM30762_cy5.tif.gz 14.4 Mb (ftp)(http) TIFF

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