GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM30762
Query DataSets for GSM30762
Status
Public on Sep 21, 2004
Title
ENCODE: TAF1-HeLa Rep1
Sample type
genomic
Channel 1
Source name
Chromatin immunoprecipitated DNA using TAF1 antibody
Organism
Homo sapiens
Extracted molecule
genomic DNA
Channel 2
Source name
input DNA
Organism
Homo sapiens
Extracted molecule
genomic DNA
Description
Genome-wide location analysis of TAF1 binding at ENCODE regions in HeLa cells. Replicate 1 of 3.
Submission date
Sep 17, 2004
Last update date
Nov 22, 2005
Contact name
Chunxu Qu
E-mail(s)
qchunxu@ucsd.edu
Phone
(858)822-5767
Organization name
Ludwig Institute for Cancer Research
Department
Gene Regulation
Lab
RenLab
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platform ID
GPL1454
Series (1)
GSE1778
ENCODE: GWLA of TAF1, RNA PolII binding in four cell lines
Data table header descriptions
ID_REF
VALUE
same as UNF_VALUE but with flagged values removed
SIGNIFICANCE
significance
P-VAL
p-value calculated using single array error model
F635_INT
F635 intensity with background intensity subtracted
F532_INT
F532 intensity with background intensity subtracted
F635_MEDIAN
F635 mdian intensity
F635_MEAN
F635 mean intensity
F635_SD
F635 standard deviation
B635_MEDIAN
B635 median intensity
B635_MEAN
B635 mean intensity
B635_SD
B635 standard deviation
F532_MEDIAN
F532 median intensity
F532_MEAN
F532 mean intensity
F532_SD
F532 standard deviation
B532_MEDIAN
B532 median intensity
B532_MEAN
B532 mean intensity
B532_SD
B532 standard deviation
FLAG
flag from GenePro, 0 is useful
PRE_VALUE
enrichment value (F635/F532)
UNF_VALUE
log ratio (log2 of PRE_VALUE)
Data table
ID_REF
VALUE
SIGNIFICANCE
P-VAL
F635_INT
F532_INT
F635_MEDIAN
F635_MEAN
F635_SD
B635_MEDIAN
B635_MEAN
B635_SD
F532_MEDIAN
F532_MEAN
F532_SD
B532_MEDIAN
B532_MEAN
B532_SD
FLAG
PRE_VALUE
UNF_VALUE
1
0.2387873
0.0956
0.254984
1275
1080.83
1362
1355
288
87
95
55
812
828
143
172
176
37
0
1.18
0.2387873
2
0.1634993
0.0654
0.325942
1617
1443.95
1704
1709
391
87
95
53
1020
998
266
167
173
37
0
1.12
0.1634993
3
0.0285693
0.0099
0.472855
3050
2998.71
3135
3097
661
85
95
57
1936
1949
416
171
173
34
0
1.02
0.0285693
4
0.0426443
0.0145
0.460164
1790
1745.70
1877
1951
501
87
103
82
1207
1132
263
177
183
52
0
1.03
0.0426443
5
0.2868813
0.1129
0.218256
1963
1611.02
2045
1927
573
82
98
72
1127
1121
330
176
182
47
0
1.22
0.2868813
6
0.2630343
0.1017
0.241647
1538
1283.70
1623
1675
615
85
97
56
931
947
309
172
174
37
0
1.20
0.2630343
7
0.3334243
0.1330
0.179587
1023
809.77
1111
1165
306
88
98
57
649
682
157
168
171
38
0
1.26
0.3334243
8
-0.2515393
-0.1021
0.759321
1380
1648.53
1468
1423
428
88
102
60
1145
1067
268
172
174
37
0
0.84
-0.2515393
9
-0.3584543
-0.1414
0.835231
910
1166.07
1001
1023
287
91
102
57
862
827
211
172
174
37
0
0.78
-0.3584543
10
0.4005383
0.1551
0.142445
476
359.71
569
568
203
93
100
57
388
398
90
171
172
35
0
1.32
0.4005383
11
-0.0740013
-0.0324
0.588496
1322
1397.92
1413
1476
331
91
102
58
1003
1008
185
177
177
35
0
0.95
-0.0740013
12
-0.3040063
-0.1220
0.799811
2937
3622.66
3028
3056
448
91
102
62
2312
2275
262
181
185
53
0
0.81
-0.3040063
13
-0.3584543
-0.1406
0.833754
1865
2383.29
1954
1890
536
89
102
63
1581
1520
340
177
182
51
0
0.78
-0.3584543
14
0.2868813
0.1139
0.216189
1556
1273.47
1645
1701
516
89
103
54
924
955
255
171
175
36
0
1.22
0.2868813
15
0.4114263
0.1616
0.132633
1326
997.30
1419
1413
372
93
107
65
759
751
185
168
173
43
0
1.33
0.4114263
16
0.1763233
0.0702
0.314149
1503
1331.44
1596
1630
354
93
102
54
956
945
191
169
171
37
0
1.13
0.1763233
17
-0.3584543
-0.1464
0.843603
1453
1873.56
1546
1577
334
93
101
56
1274
1245
206
169
171
36
0
0.78
-0.3584543
18
0.4114263
0.1555
0.141913
805
603.49
900
919
433
95
102
56
530
540
186
170
172
35
0
1.33
0.4114263
19
0.1763233
0.0696
0.315715
3664
3242.50
3760
3581
1338
96
104
56
2072
2039
650
164
165
37
0
1.13
0.1763233
20
0.0976113
0.0410
0.388729
2430
2265.66
2522
2510
347
92
103
60
1504
1501
225
169
171
37
0
1.07
0.0976113
Total number of rows:
25392
Table truncated, full table size
2679 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM30762_cy3.tif.gz
13.8 Mb
(ftp)
(http)
TIFF
GSM30762_cy5.tif.gz
14.4 Mb
(ftp)
(http)
TIFF
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|