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Sample GSM31 Query DataSets for GSM31
Status Public on Jan 24, 2001
Title NHGRI_UACC-1012
Sample type RNA
 
Channel 1
Source name melanoma, neck
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Biopsy location: neck
Patient sex: male
Patient age: 54
Passage number: 3
p16 mutation status: ND
Invasive ability: 4.9 +/- 0.1%
Vasculogenic mimicry: ND
Gel contraction: ND
Cell motility: 122.00 +/- 11.30
Scratch wound (%): 54

See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 90 148 108 166 5757500 33680.3 14928.4 163 3464.8 503.9 90 148 108 166 4489932 24821.9 11101.8 150 4145.4 357.1 163 1.357 0.1436393 99.000 0.456 2.083 0.975 0.187 1.392
2 694 154 712 172 533912 3284.6 1288.8 90 2923.7 398.5 694 154 712 172 734555 4816.1 2278.8 85 3725.2 253.4 94 0.682 -0.1549023 99.000 0.456 2.083 0.975 0.187 0.700
3 126 148 144 166 18703 1417.4 284.4 0 3258.3 417.7 126 148 144 166 22950 1680.0 71.2 12 4057.5 313.6 12 0.844 -0.0624823 99.000 0.456 2.083 0.975 0.187 0.866
4 730 154 748 172 452808 1754.6 755.1 89 2962.2 379.0 730 154 748 172 606753 2624.4 1252.1 96 3696.0 245.9 104 0.669 -0.1636763 99.000 0.456 2.083 0.975 0.187 0.686
5 163 148 181 166 1050961 6280.7 2344.8 109 3187.4 423.3 163 148 181 166 1368668 8318.4 3209.1 112 4012.0 291.1 119 0.755 -0.1106983 99.000 0.456 2.083 0.975 0.187 0.775
6 767 154 785 172 6069616 48839.0 18484.7 121 3038.1 411.3 767 154 785 172 6129164 48677.6 19567.1 122 3708.4 273.9 125 1.003 0.0128373 99.000 0.456 2.083 0.975 0.187 1.030
7 199 148 217 166 785596 5776.2 2317.6 89 3151.0 472.5 199 148 217 166 1268500 10289.2 4388.4 67 4125.6 467.0 96 0.561 -0.2395783 99.000 0.456 2.083 0.975 0.187 0.576
8 803 154 821 172 1854512 23121.3 9021.1 79 2998.6 389.9 803 154 821 172 1512031 17675.2 8644.1 67 3621.0 238.5 79 1.308 0.1277533 99.000 0.456 2.083 0.975 0.187 1.342
9 236 148 254 166 1853418 10420.6 3093.6 128 3009.9 480.9 236 148 254 166 2751261 15954.9 5444.4 139 3981.8 444.0 146 0.653 -0.1739253 99.000 0.456 2.083 0.975 0.187 0.670
10 839 154 857 172 571905 4661.3 2563.3 77 2964.1 390.4 839 154 857 172 703463 5772.4 3830.5 78 3607.1 242.7 83 0.808 -0.0814453 99.000 0.456 2.083 0.975 0.187 0.829
11 272 148 290 166 5664523 37283.7 16594.4 149 2890.2 399.7 272 148 290 166 3657249 22121.3 10948.3 129 3816.6 307.4 149 1.685 0.2377953 99.000 0.456 2.083 0.975 0.187 1.729
12 875 154 893 172 1 1.0 0.0 0 2948.6 395.8 875 154 893 172 1 1.0 0.0 0 3599.7 239.5 0 1.000 0.0111473 99.000 0.456 2.083 0.975 0.187 1.026
13 82 760 100 778 1115988 9909.4 4225.2 86 3067.2 365.6 82 760 100 778 1048858 8198.9 3467.6 92 3997.2 254.3 94 1.209 0.0934223 99.000 0.456 2.083 0.975 0.187 1.240
14 699 759 717 777 6620648 44921.8 21896.7 147 2708.8 358.8 699 759 717 777 5070912 32770.5 20341.7 122 3710.8 246.9 147 1.371 0.1482943 99.000 0.456 2.083 0.975 0.187 1.407
15 118 760 136 778 1250338 10769.6 4001.5 86 3123.0 421.0 118 760 136 778 2787530 26993.1 9244.1 98 3979.4 248.2 98 0.399 -0.3882773 99.000 0.456 2.083 0.975 0.187 0.409
16 735 759 753 777 904045 5158.1 1547.7 115 2703.1 366.2 735 759 753 777 1116891 6020.2 1864.9 115 3691.9 246.7 123 0.857 -0.0560113 99.000 0.456 2.083 0.975 0.187 0.879
17 155 760 173 778 1054717 10105.9 3809.3 81 3078.1 393.4 155 760 173 778 1151572 10426.3 3776.0 83 3968.4 235.6 88 0.969 -0.0021773 99.000 0.456 2.083 0.975 0.187 0.995
18 772 759 790 777 755534 4369.1 1542.2 105 2692.0 382.9 772 759 790 777 1446612 9838.5 3713.2 111 3681.2 259.2 115 0.444 -0.3410353 99.000 0.456 2.083 0.975 0.187 0.456
19 192 760 210 778 781949 4615.2 1584.7 107 3051.0 438.4 192 760 210 778 1198910 7758.8 3008.7 105 3995.2 285.6 110 0.595 -0.2146703 99.000 0.456 2.083 0.975 0.187 0.610
20 808 759 826 777 1308798 9274.3 2985.4 114 2623.8 392.9 808 759 826 777 1217809 7424.0 2473.4 112 3647.0 292.1 118 1.249 0.1078883 99.000 0.456 2.083 0.975 0.187 1.282

Total number of rows: 8192

Table truncated, full table size 1323 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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