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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 11, 2008 |
| Title |
ChIP-seq 8hr_IgG |
| Sample type |
genomic |
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| Source name |
CD4+ T cells
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| Organism |
Mus musculus |
| Characteristics |
8 hour
IgG control
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| Treatment protocol |
Treatment protocol as described in Liao et al., 2008
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| Growth protocol |
Growth protocol as described in Liao et al., 2008
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Treatment protocol as described in Liao et al., 2008
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| Description |
IgG control
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| Data processing |
Sequence reads were obtained and mapped to the mouse (February, 2006) and human (March, 2006) genomes using the Illumina Genome Analyzer Pipeline. All reads mapping with two or fewer mismatches were retained and read starts were summed in sliding windows of 400 bp to create summary windows. Peak detection was performed with the Model-based Analysis of ChIP-Seq (MACS) algorithm (http://liulab.dfci.harvard.edu/MACS/)
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| Submission date |
Aug 05, 2008 |
| Last update date |
Dec 11, 2008 |
| Contact name |
Dustin E Schones |
| E-mail(s) |
schonesde@mail.nih.gov
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| Phone |
301-402-0970
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| Fax |
301-402-0971
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| Organization name |
NHLBI/NIH
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| Lab |
Zhao Lab
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| Street address |
Building 10, Room 7B20A, 9000 Rockville Pike
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| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
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| Platform ID |
GPL7139 |
| Series (1) |
| GSE12346 |
Priming for Th2 differentiation requires IL-2-mediated induction of IL-4 receptor alpha chain expression |
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| Supplementary file |
Size |
Download |
File type/resource |
| GSM310073_mm8-Th2-8hr-IgG.bed.gz |
53.0 Mb |
(ftp)(http) |
BED |
| Processed data provided as supplementary file |
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