|
Status |
Public on Sep 02, 2008 |
Title |
Wild-type |
Sample type |
SRA |
|
|
Source name |
wild-type
|
Organism |
Schizosaccharomyces pombe |
Characteristics |
genotype: wild-type Ago1 pull-down
|
Extracted molecule |
total RNA |
Extraction protocol |
Ago1-associated RNAs were recovered from Flag-purified FLAG-Ago1 protein by phenol-chloroform extraction and EtOH precipitation
|
|
|
Library strategy |
RIP-Seq |
Library source |
transcriptomic |
Library selection |
other |
Instrument model |
454 GS |
|
|
Description |
Argonaute-associated small RNAs were sequenced from wild-type fission yeast.
|
Data processing |
We selected 454 reads with matches to the terminal 9 nucleotides of the 5' linker and the first 9 nucleotides of the 3' linker.
|
|
|
Submission date |
Aug 12, 2008 |
Last update date |
May 15, 2019 |
Contact name |
Noah Spies |
Organization name |
Stanford University
|
Department |
Pathology
|
Lab |
Arend Sidow
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305 |
Country |
USA |
|
|
Platform ID |
GPL9157 |
Series (1) |
GSE12416 |
TRAMP-mediated RNA surveillance prevents spurious entry of RNAs into the S. pombe siRNA pathway |
|
Relations |
SRA |
SRX001945 |
BioSample |
SAMN02195244 |