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Sample GSM311596 Query DataSets for GSM311596
Status Public on Sep 02, 2008
Title Wild-type
Sample type SRA
 
Source name wild-type
Organism Schizosaccharomyces pombe
Characteristics genotype: wild-type Ago1 pull-down
Extracted molecule total RNA
Extraction protocol Ago1-associated RNAs were recovered from Flag-purified FLAG-Ago1 protein by phenol-chloroform extraction and EtOH precipitation
 
Library strategy RIP-Seq
Library source transcriptomic
Library selection other
Instrument model 454 GS
 
Description Argonaute-associated small RNAs were sequenced from wild-type fission yeast.
Data processing We selected 454 reads with matches to the terminal 9 nucleotides of the 5' linker and the first 9 nucleotides of the 3' linker.
 
Submission date Aug 12, 2008
Last update date May 15, 2019
Contact name Noah Spies
Organization name Stanford University
Department Pathology
Lab Arend Sidow
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL9157
Series (1)
GSE12416 TRAMP-mediated RNA surveillance prevents spurious entry of RNAs into the S. pombe siRNA pathway
Relations
SRA SRX001945
BioSample SAMN02195244

Data table header descriptions
SEQUENCE Unique short RNA sequence
COUNT Abundance count (number of reads)

Data table
SEQUENCE COUNT
TACAAGTAAGATTATAAGGTGTTTGT 2
TTGCTTGTTAAATGTTTACTTG 1
CAATGCTAACTTCGATTAGACTGGC 2
TAGCTAGCATGTGAATTACTTG 1
TTAAAAGGATAGTTTTTAGGTA 1
AACATAGGAATCCGGGGTGCTGT 1
CGGGTTTATTTGCTTGTATGTT 1
GGTCACTTAGGGGTCACCA 1
ATAGTTGGTTATTGCGCACGAC 4
TAAAAGGGCTAGCATGTAAAAG 1
GTCCAGAAGAATGAAAAAGAAGGTC 1
GACGGTCCCAGGTTCGTTCCCT 1
CGTCAAGCAGGTACTCGGTTGC 1
TCATTCACCAATAGTATTTTTAA 1
TTATCAGTATCTTCTCTTCTC 1
TCGATCTTAGCAACGAAATGGAG 1
TGAAACGNTGAAATGGGCAACA 1
TAATGTCGGTACTGACCTGGC 2
TCACGGTATTTTTTTGAAATCTTTGATA 2
TNTGTTTCTATAGGCCAGGTTC 1

Total number of rows: 131158

Table truncated, full table size 3246 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data included within Sample table

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