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Sample GSM31295 Query DataSets for GSM31295
Status Public on Jan 20, 2005
Title Conico leaves compared with W23 b,pl leaves (+UV-B)
Sample type RNA
 
Channel 1
Source name W23 b,pl leaves (+UV-B)
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name Conico leaves compared (+UV-B)
Organism Zea mays
Extracted molecule total RNA
 
 
Description In these comparisons, samples from one landrace were hybridized with samples from W23 line under the same treatment (+UV-B, supplementary UV-B; -UV-B, no UV-B).
 
Submission date Sep 30, 2004
Last update date May 27, 2005
Contact name Paula Casati
E-mail(s) casati@cefobi-conicet.gov.ar
Phone 54-341-4371955
Organization name Universidad Nacional de Rosario
Department Biological Sciences
Lab Casati
Street address Suipacha 531
City Rosario
State/province Santa Fe
ZIP/Postal code 2000
Country Argentina
 
Platform ID GPL499
Series (1)
GSE1807 Solar UV-B regulation of high altitude maize

Data table header descriptions
ID_REF
VALUE log 2 ratio Conico/W23
ratio (M-N)/(J-K) ratio Conico/W23
CH1I Mean Intensity Cy3
CH1B Mean Intensity Cy3 of background
CH1AB Median Intensity Cy3 of background
CH2I Mean Intensity Cy5
CH2B Mean Intensity Cy5 of background
CH2AB Median Intensity Cy5 of background
SPIX See Scanalyze Manual
BGPIX See Scanalyze Manual
EDGE See Scanalyze Manual
RAT2 See Scanalyze Manual
MRAT See Scanalyze Manual
REGR See Scanalyze Manual
CORR See Scanalyze Manual
LFRAT See Scanalyze Manual
CH1GTB1 See Scanalyze Manual
CH2GTB1 See Scanalyze Manual
CH1GTB2 See Scanalyze Manual
CH2GTB2 See Scanalyze Manual
CH1EDGEA See Scanalyze Manual
CH2EDGEA See Scanalyze Manual
FLAG See Scanalyze Manual
CH1KSD See Scanalyze Manual
CH1KSP See Scanalyze Manual
CH2KSD See Scanalyze Manual
CH2KSP See Scanalyze Manual

Data table
ID_REF VALUE ratio (M-N)/(J-K) CH1I CH1B CH1AB CH2I CH2B CH2AB SPIX BGPIX EDGE RAT2 MRAT REGR CORR LFRAT CH1GTB1 CH2GTB1 CH1GTB2 CH2GTB2 CH1EDGEA CH2EDGEA FLAG CH1KSD CH1KSP CH2KSD CH2KSP
1 -0.045256281 0.969117647 857 177 203 877 218 231 156 1166 0 0.9691 1.091 0.8229 0.923 0.8831 0.7949 0.7756 0.4423 0.5064 0.2911 0.2862 0 0.4775 2.82E-28 0.4208 4.68E-22
2 0.14962544 1.109281437 848 180 328 962 221 383 156 974 0 1.109 1.21 1.107 0.9709 1.145 0.7885 0.8077 0.4423 0.5577 0.2566 0.2696 0 0.3892 1.63E-18 0.4447 4.84E-24
3 0.004452766 1.00309119 832 185 395 878 229 483 156 967 0 1.003 1.093 1.123 0.9542 1.186 0.8205 0.8205 0.4936 0.5513 0.2622 0.2489 0 0.4456 4.11E-24 0.4268 3.75E-22
4 0.246050226 1.185955787 4802 188 511 5712 240 596 156 955 0 1.186 1.241 1.137 0.9571 1.197 0.9167 0.9103 0.7051 0.75 0.3688 0.3855 0 0.6038 7.57E-44 0.6174 1.40E-45
5 0.214035408 1.159928122 4634 182 430 5397 233 465 156 943 0 1.16 1.197 1.11 0.9501 1.177 0.8526 0.8782 0.6795 0.7179 0.3554 0.367 0 0.5809 1.55E-40 0.6022 1.54E-43
6 0.254427021 1.192861893 4688 177 249 5607 226 292 156 943 0 1.193 1.224 1.162 0.956 1.226 0.8526 0.8526 0.6859 0.6987 0.3531 0.37 0 0.6456 0.00E+00 0.6294 0.00E+00
7 0.550197083 1.464285714 2278 178 195 3297 222 239 156 1009 0 1.464 1.477 1.388 0.9513 1.486 0.9872 0.9936 0.9615 0.9679 0.2566 0.2635 0 0.916 0.00E+00 0.922 0.00E+00
8 0.442829651 1.359267735 2365 180 343 3193 223 392 156 1029 0 1.359 1.351 1.27 0.9518 1.353 0.9808 0.9679 0.9038 0.9167 0.2807 0.2817 0 0.8277 0.00E+00 0.8475 0.00E+00
9 0.493779687 1.408129176 1973 177 335 2747 218 386 156 1029 0 1.408 1.419 1.305 0.9579 1.38 0.9551 0.9744 0.8526 0.8974 0.2841 0.3046 0 0.7818 0.00E+00 0.8269 0.00E+00
10 0.691721993 1.615210274 4144 173 252 6625 211 237 156 1010 0 1.615 1.613 1.545 0.9664 1.623 0.7949 0.8141 0.5513 0.5897 0.4056 0.437 0 0.5017 1.24E-30 0.5162 2.11E-32
11 0.762019351 1.695862676 4709 165 242 7916 210 232 156 997 0 1.696 1.9 1.446 0.9322 1.599 0.8141 0.7564 0.5192 0.5962 0.4088 0.4285 0 0.5235 3.00E-33 0.5312 3.13E-34
12 0.741104558 1.671455051 4478 162 247 7421 207 253 156 975 0 1.671 1.643 1.471 0.9394 1.609 0.8462 0.7949 0.5705 0.6026 0.4105 0.4613 0 0.5626 3.18E-38 0.5082 2.85E-31
13 0.089107474 1.063711911 3048 160 186 3276 204 242 156 1010 0 1.064 1.058 1.021 0.9606 1.065 0.9551 0.9615 0.9038 0.9103 0.2914 0.2693 0 0.8633 0.00E+00 0.8431 0.00E+00
14 0.098233105 1.070461645 3040 159 173 3286 202 216 156 1010 0 1.07 1.083 1.046 0.9727 1.078 0.9679 0.9551 0.8974 0.9167 0.3472 0.3256 0 0.8717 0.00E+00 0.8638 0.00E+00
15 0.138926475 1.101085482 3104 156 170 3444 198 210 156 1010 0 1.101 1.111 1.075 0.9632 1.121 0.9744 0.9744 0.9359 0.9167 0.3323 0.33 0 0.9032 0.00E+00 0.8865 0.00E+00
16 -0.174732845 0.885931559 419 156 167 432 199 207 156 1076 0 0.8859 0.9362 0.7755 0.8255 0.9271 0.8654 0.8333 0.6667 0.6474 0.1519 0.154 0 0.6543 0.00E+00 0.5681 1.81E-39
17 -0.187627003 0.87804878 443 156 167 453 201 207 156 1076 0 0.878 0.9701 0.6953 0.782 0.8608 0.8846 0.7885 0.6603 0.641 0.1794 0.1691 0 0.6394 0.00E+00 0.5764 1.30E-40
18 -0.071191048 0.951851852 427 157 161 453 196 204 156 1076 0 0.9519 0.9602 0.948 0.8565 1.126 0.8974 0.7949 0.6795 0.6603 0.1652 0.1823 0 0.6702 0.00E+00 0.5855 6.61E-42
19 -0.363999943 0.777007299 2897 157 159 2324 195 203 156 1010 0 0.777 0.782 0.766 0.9701 0.784 0.8974 0.8654 0.7372 0.75 0.36 0.3309 0 0.7475 0.00E+00 0.7268 0.00E+00
20 -0.386264076 0.765108324 2787 156 160 2211 198 206 156 1010 0 0.7651 0.7721 0.7635 0.9633 0.7858 0.9551 0.8846 0.7885 0.7756 0.3699 0.3372 0 0.7869 0.00E+00 0.713 0.00E+00

Total number of rows: 17296

Table truncated, full table size 2837 Kbytes.




Supplementary data files not provided
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