 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Dec 25, 2018 |
| Title |
SUDV 1dpi [RNA-468] |
| Sample type |
SRA |
| |
|
| Source name |
Huh7 cells_SUDV
|
| Organism |
Sudan ebolavirus |
| Characteristics |
cell line: Huh7
cell type: human liver cells
infected with: SUDV
time point: 1 dpi
|
| Growth protocol |
cell monolayers were infected with low moi, and harvested at 1-3 dpi
|
| Extracted molecule |
total RNA |
| Extraction protocol |
total RNA was harvested, and mRNA was purified
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina MiniSeq |
| |
|
| Description |
RNA-468_S1_L001
|
| Data processing |
RNA-Seq Analysis performed using default parameters on CLC Genomics Workbench 11.0
reference sequences were used for EBOV, SUDV, BDBV, and RESTV
Genome_build: EBOZ-2014-IC (KT589389); SUDV Gulu-2000 (NC_006432); BDBV 2007 (NC_014373); RESTV_ITA_1992_(KY798007)
Supplementary_files_format_and_content: each table file (.xlxs format) contains measurments of mRNA abundance for each virus from 1-3 dpi (3 sheets per table)
|
| |
|
| Submission date |
May 24, 2018 |
| Last update date |
Dec 25, 2018 |
| Contact name |
César Albariño |
| E-mail(s) |
calbarino@cdc.gov
|
| Organization name |
Centers for Disease Control and Prevention
|
| Street address |
1600 Clifton Rd, MS G14
|
| City |
Atlanta |
| State/province |
GA |
| ZIP/Postal code |
30333 |
| Country |
USA |
| |
|
| Platform ID |
GPL25031 |
| Series (1) |
| GSE114905 |
Transcriptome in Huh7 cells infected with 4 Ebolaviruses |
|
| Relations |
| BioSample |
SAMN09258390 |
| SRA |
SRX4123355 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
|
|
|
|
 |
