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Sample GSM3164 Query DataSets for GSM3164
Status Public on Mar 16, 2003
Title GC2_CT18_LT2_1
Sample type genomic
 
Channel 1
Source name Typhi CT18 overnight
Organism Salmonella enterica
Extracted molecule genomic DNA
 
Channel 2
Source name Typhimurium LT2 overnight
Organism Salmonella enterica
Extracted molecule genomic DNA
 
 
Description slide 2D444-01
Keywords = Salmonella
 
Submission date Dec 13, 2002
Last update date May 27, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE113 CT18_LT2_STv2

Data table header descriptions
ID_REF
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
VALUE log ratio of PRE_VALUE
CH2%/CH1% ch2 % of total / ch1 % of total
PRE_VALUE ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL VALUE CH2%/CH1% PRE_VALUE
1 2750 2670 684.647461 13.735294 659.590942 53.165642 183.513474 13900 59.269157 0.959443 0.98185 0.998512 12.87763 0.848157 3242.579346 60.676472 4394.117188 142.224594 188.645309 18300 59.269157 0.963249 0.836235 0.995239 22.799006 0.838827 1 1 1 1 1 1 1 1 1 1 1 1 1 670.912167 3181.902874 0.004242245 0.021077122 -0.6962163 4.968389135 0.201272479
2 3010 2680 388.02298 20.338236 351.247284 63.468315 170.754776 8700 53.902 0.921511 0.987801 0.99807 6.113649 0.871355 469.397064 78.911766 449.639648 159.057831 186.609512 13600 53.902 0.954982 0.986252 0.9953 2.951109 0.786963 1 1 1 1 1 1 1 1 1 1 1 0 1 367.684744 390.485298 0.002324907 0.002586599 -0.0463233 1.112559968 0.898827955
3 3280 2680 1150.690186 64.132355 1065.138306 166.145493 173.711777 14200 66.08445 0.933776 0.971397 0.994888 6.925798 0.865979 1224.346191 88.279411 1213.101563 160.015289 178.233932 15600 66.08445 0.956591 0.970352 0.996109 7.651433 0.857756 1 1 1 1 1 1 1 1 1 1 1 1 1 1086.557831 1136.06678 0.006870414 0.007525377 -0.0395453 1.095330969 0.912966061
4 3530 2680 812.050354 62.411766 687.768066 145.200653 185.067963 13900 66.08445 0.956947 0.979843 0.996185 5.592608 0.845331 752.435364 79.235291 681.702148 171.210022 189.319046 14700 66.08445 0.954619 0.981087 0.995071 4.394809 0.837602 1 1 1 1 1 1 1 1 1 1 1 1 1 749.638588 673.200073 0.00474004 0.004459319 0.0265133 0.940776743 1.062951446
5 3770 2690 1155.342407 81.411766 938.887695 185.252655 174.80777 14600 51.942451 0.924477 0.974396 0.994118 6.236577 0.863986 1156 84 1020.295959 172.633423 188.476501 16800 51.942451 0.969783 0.971497 0.994797 6.69627 0.839134 1 1 1 1 1 1 1 1 1 1 1 1 1 1073.930641 1072 0.006790571 0.007100995 -0.0194133 1.045713956 0.956284455
6 4020 2690 742.863281 23.794117 692.369934 81.454971 183.686844 13900 51.942451 0.949968 0.981796 0.997414 9.119926 0.847842 774.568848 68.5 740.460022 173.42662 187.799744 16700 51.942451 0.96425 0.980568 0.9944 4.466263 0.840364 1 1 1 1 1 1 1 1 1 1 1 1 1 719.069164 706.068848 0.004546746 0.004677044 -0.0122713 1.02865736 0.972141005
7 4270 2700 503.565216 60.60294 453.037201 173.701599 180.716904 13800 45.384434 0.944291 0.987053 0.995247 2.899025 0.773073 598.636902 118.676468 543.689392 215.54744 186.779999 17900 45.384434 0.963358 0.98336 0.994492 2.777286 0.74061 1 1 1 1 1 0 1 1 1 1 1 0 1 442.962276 479.960434 0.002800895 0.003179288 -0.0550333 1.135097188 0.880981832
8 4520 2710 591.397034 52 526.079529 148.054947 175.896927 13600 40.267548 0.908529 0.983902 0.995522 3.994443 0.833179 668.876465 110.176468 644.477783 189.571945 187.799744 17000 40.267548 0.959071 0.981293 0.995605 3.528352 0.819114 1 1 1 1 1 1 1 1 1 1 1 1 1 539.397034 558.699997 0.003410661 0.003700863 -0.0354643 1.085086768 0.921585287
9 4770 2710 695.268677 91.102943 659.513672 319.759705 184.895889 13400 40.267548 0.955674 0.981461 0.987488 2.174347 0.579826 928.674133 52.514706 945.532471 112.213745 186.950348 17800 40.267548 0.962495 0.972786 0.996796 8.275939 0.841908 1 1 1 1 1 0 1 1 1 1 1 1 1 604.165734 876.159427 0.0038202 0.005803734 -0.1816213 1.519222558 0.658231406
10 5010 2710 552.812012 51.720589 543.362183 157.581421 178.768906 13300 31.473976 0.926287 0.984657 0.996422 3.508104 0.818449 759.424988 128.455887 743.312195 281.5896 190.826248 16000 31.473976 0.967343 0.978233 0.995354 2.696921 0.719179 1 1 1 1 1 1 1 1 1 1 1 0 1 501.091423 630.969101 0.003168451 0.004179578 -0.1202853 1.319123555 0.758079102
11 5270 2710 404.720337 28.205883 383.689453 91.190559 177.518127 11800 40.267548 0.92179 0.987167 0.996712 4.438182 0.844677 632.077393 91.25 629.962891 167.940048 181.77066 15500 40.267548 0.929246 0.981621 0.995613 3.763709 0.826501 1 1 1 1 1 1 1 1 1 1 1 1 1 376.514454 540.827393 0.002380738 0.003582474 -0.1774713 1.504774351 0.664551465
12 5520 2720 476.153229 38.970589 450.312561 123.547562 181.595459 12400 37.191448 0.941795 0.984734 0.996574 3.854007 0.829177 683.676453 113.470589 617.717102 199.710266 185.754669 17000 37.191448 0.962675 0.980774 0.993866 3.423342 0.815612 1 1 1 1 1 1 1 1 1 1 1 1 1 437.18264 570.205864 0.002764349 0.003777079 -0.1355633 1.366353657 0.73187494
13 5780 2730 1004.071899 51.60294 872.59906 127.683624 176.258484 15300 46.645435 0.924661 0.976112 0.995834 7.863748 0.861348 1079.655151 76.117645 976.532715 215.669281 183.339935 17400 46.645435 0.954293 0.970634 0.994362 5.006068 0.848473 1 1 1 1 1 1 1 1 1 1 1 1 1 952.468959 1003.537506 0.006022556 0.006647495 -0.0428773 1.103766299 0.905988886
14 6020 2730 739.532837 55.808823 672.138733 140.7388 176.258484 13700 36.673321 0.933625 0.980316 0.996078 5.254648 0.861348 810.59491 67.058823 725.335815 165.062805 185.925949 15800 36.673321 0.961717 0.979652 0.994606 4.910827 0.843771 1 1 1 1 1 1 1 1 1 1 1 1 1 683.724014 743.536087 0.004323255 0.004925229 -0.0566163 1.139240906 0.87777747
15 6270 2740 1160.326904 22.25 882.564392 59.366901 180.010986 15600 38.815731 0.927665 0.977791 0.998215 19.545014 0.854526 1483.010254 87.588234 1301.464722 153.368561 190.992981 19600 38.815731 0.962733 0.966896 0.995895 9.669584 0.834558 1 1 1 1 1 1 1 1 1 1 1 1 1 1138.076904 1395.42202 0.007196174 0.009243362 -0.1087283 1.284482863 0.778523427
16 6520 2750 777.630859 71.735291 647.666443 211.247726 183.513474 14900 43.224873 0.967652 0.980843 0.99453 3.681132 0.823979 842.422485 163.044113 769.698853 523.892334 184.378693 18700 43.224873 0.955452 0.977158 0.992867 1.608007 0.428802 1 1 1 1 1 1 1 1 1 1 1 0 1 705.895568 679.378372 0.004463448 0.004500245 -0.0035663 1.008243926 0.991823481
17 6770 2740 632.031982 45.191177 563.464111 110.265518 184.378693 12500 38.815731 0.957356 0.985176 0.996735 5.73191 0.846584 662.323669 54.161766 688.214172 141.221924 189.150833 17300 38.815731 0.968379 0.979553 0.995827 4.689949 0.837908 1 1 1 1 1 1 1 1 1 1 1 1 1 586.840805 608.161903 0.003710653 0.004028502 -0.0356933 1.085658556 0.921099911
18 7020 2750 852.138184 46.573528 670.529114 121.141624 183.339935 15200 43.224873 0.956324 0.983398 0.996208 7.034231 0.848473 979.599976 110.088234 844.217957 243.254044 176.619293 17500 43.224873 0.944624 0.977219 0.99202 4.027066 0.834082 1 1 1 1 1 1 1 1 1 1 1 1 1 805.564656 869.511742 0.005093666 0.0057597 -0.0533693 1.1307573 0.884363072
19 2770 2920 489.353973 61.529411 439.393494 161.912125 176.258484 11300 67.635506 0.937439 0.988441 0.994286 3.022343 0.80089 490.273987 73.308823 519.590576 184.339508 186.609512 14600 67.635506 0.95693 0.985138 0.996193 2.659625 0.709233 1 1 1 1 1 1 1 1 1 1 1 0 1 427.824562 416.965164 0.002705177 0.002762003 -0.0090283 1.021006274 0.979425911
20 3020 2930 1376.199951 136.279419 1259.090942 525.68335 178.41243 13500 59.466713 0.940422 0.966286 0.99189 2.617926 0.698114 1574.42041 97.5 1607.340088 209.462738 188.138428 17600 59.466713 0.965169 0.957008 0.995506 7.51647 0.839748 1 1 1 1 1 0 1 1 1 1 1 1 1 1239.920532 1476.92041 0.007840141 0.009783212 -0.0961583 1.247836236 0.80138721

Total number of rows: 5184

Table truncated, full table size 1794 Kbytes.




Supplementary data files not provided
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