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Sample GSM3168 Query DataSets for GSM3168
Status Public on Mar 16, 2003
Title GC2_CT18_LT2_5
Sample type genomic
 
Channel 1
Source name Typhi CT18 overnight
Organism Salmonella enterica
Extracted molecule genomic DNA
 
Channel 2
Source name Typhimurium LT2 overnight
Organism Salmonella enterica
Extracted molecule genomic DNA
 
 
Description slide 2D446-02
Keywords = Salmonella
 
Submission date Dec 13, 2002
Last update date May 27, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE113 CT18_LT2_STv2

Data table header descriptions
ID_REF
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
VALUE log ratio of PRE_VALUE
CH2%/CH1% ch2 % of total / ch1 % of total
PRE_VALUE ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL VALUE CH2%/CH1% PRE_VALUE
1 2210 21570 3752.509033 27.897058 3265.988525 92.399063 181.068848 16700 42.075443 0.936387 0.909821 0.997414 40.611981 0.852602 6144.482422 162.455887 7339.148926 449.494324 184.378693 19700 42.075443 0.961356 0.779396 0.983513 13.669766 0.846584 1 1 1 1 1 1 1 1 1 1 1 1 1 3724.611975 5982.026535 0.015735271 0.023798734 -0.1796803 1.512445076 0.661181035
2 2470 21580 1577.393921 37.014706 1623.154663 110.129166 180.716904 13200 38.880592 0.940595 0.956772 0.997231 14.323126 0.853242 1580.694214 64.926468 1740.221191 150.39772 183.513474 15700 38.880592 0.949767 0.955589 0.994949 10.510094 0.848157 1 1 1 1 1 1 1 1 1 1 1 1 1 1540.379215 1515.767746 0.0065076 0.00603029 0.0330833 0.926653401 1.079152139
3 2720 21580 5110.798828 37.382355 4374.46875 93.568558 182.992371 16900 38.880592 0.938784 0.893608 0.997498 54.6209 0.849105 6229.787109 50.573528 6032.763672 119.289604 184.723648 18300 38.880592 0.958097 0.863007 0.996033 52.224057 0.845957 1 1 1 1 1 1 1 1 1 1 1 1 1 5073.416473 6179.213581 0.021433531 0.024583217 -0.0595453 1.146951369 0.871876547
4 2970 21580 4450.185547 57.323528 3518.872559 188.923141 167.555771 15100 38.880592 0.906307 0.924942 0.99588 23.555534 0.877171 4382.565918 74.102943 4076.030273 189.777023 186.097076 17500 38.880592 0.958083 0.904594 0.994431 23.093238 0.84346 1 1 1 1 1 1 1 1 1 1 1 1 1 4392.862019 4308.462975 0.01855841 0.017140673 0.0345133 0.923606786 1.082711837
5 3220 21590 4870.987305 26.132353 3769.13208 95.462723 175.896927 15800 32.145092 0.926475 0.911079 0.997849 51.02502 0.862006 5331.894531 55.044117 5215.176758 130.368073 182.992371 19000 32.145092 0.966053 0.888985 0.995476 40.898776 0.849105 1 1 1 1 1 1 1 1 1 1 1 1 1 4844.854952 5276.850414 0.020467933 0.02099328 -0.0110063 1.025666843 0.974975458
6 3460 21590 4300.429688 51 3775.728516 145.030106 182.12056 16300 24.770061 0.953989 0.912178 0.9944 29.651979 0.85069 5089.982422 61.867645 4607.47168 188.745422 178.41243 17200 24.770061 0.92545 0.900139 0.995476 26.967448 0.857432 1 1 1 1 1 1 1 1 1 1 1 1 1 4249.429688 5028.114777 0.017952455 0.020003717 -0.0469873 1.114260788 0.897455973
7 3720 21600 3403.625732 58.75 2639.461426 183.418564 177.697342 15500 27.475687 0.92239 0.934967 0.99501 18.556604 0.858732 3744.892578 54.941177 3561.921143 145.428024 186.268051 17700 27.475687 0.962558 0.917648 0.996796 25.750832 0.843149 1 1 1 1 1 1 1 1 1 1 1 1 1 3344.875732 3689.951401 0.01413101 0.014680004 -0.0165533 1.038850304 0.962602597
8 3970 21600 3225.582764 37.044117 2780.531738 99.771149 179.124664 16300 27.475687 0.946972 0.932487 0.996994 32.329815 0.856137 3552.560547 77.573532 3580.668701 135.743652 184.033096 18200 27.475687 0.956546 0.921616 0.996269 26.171099 0.847213 1 1 1 1 1 1 1 1 1 1 1 1 1 3188.538647 3474.987015 0.013470536 0.013824795 -0.0112743 1.026298781 0.974375122
9 4220 21600 3998.333252 33.941177 3372.827148 113.334648 181.42009 15300 27.475687 0.953441 0.91925 0.996033 35.279002 0.851963 5247.895508 103.264709 4873.943359 205.937225 181.77066 16300 27.475687 0.925261 0.886528 0.994881 25.482986 0.851326 1 1 1 1 1 1 1 1 1 1 1 1 1 3964.392075 5144.630799 0.016748264 0.020467261 -0.0870903 1.222052676 0.818295332
10 4470 21600 3736.714355 23.911764 3431.038818 76.054718 176.799423 16800 27.475687 0.928352 0.914085 0.997841 49.13192 0.860365 4373.84375 71.808823 4310.495117 133.21907 186.950348 17900 27.475687 0.96336 0.903015 0.996727 32.831964 0.841908 1 1 1 1 1 1 1 1 1 1 1 1 1 3712.802591 4302.034927 0.015685381 0.0171151 -0.0378843 1.091149821 0.916464431
11 4720 21610 3164.828125 58.073528 2665.931152 140.356079 175.896927 15700 26.009995 0.919731 0.940308 0.995712 22.548565 0.862006 4195.232422 32.426472 4238.148438 122.48793 189.487106 18500 26.009995 0.959382 0.902512 0.996994 34.25017 0.837296 1 1 1 1 1 1 1 1 1 1 1 1 1 3106.754597 4162.80595 0.013125025 0.016561195 -0.1009923 1.261802924 0.792516788
12 4960 21610 2272.654297 33.955883 1675.979492 107.814713 185.239883 16200 16.024008 0.947754 0.955505 0.99662 21.079259 0.845018 3003.830811 45.617645 2795.104004 109.165359 190.826248 20100 16.024008 0.966233 0.936005 0.997009 27.516337 0.834861 1 1 1 1 1 1 1 1 1 1 1 1 1 2238.698414 2958.213166 0.009457771 0.011768876 -0.0949463 1.244360413 0.803625694
13 5220 21610 6425.491211 30.617647 5619.999512 89.677872 179.656982 16700 26.009995 0.925461 0.880226 0.99752 71.6508 0.855169 6610.57373 73.661766 6489.946777 194.26944 189.150833 19000 26.009995 0.963996 0.865196 0.994049 34.027862 0.837908 1 1 1 1 1 1 1 1 1 1 1 1 1 6394.873564 6536.911964 0.027016256 0.026006275 0.0165473 0.962615801 1.038836054
14 5470 21620 3750.5 49 3390.546143 124.298149 178.41243 15600 28.251127 0.927577 0.91877 0.995903 30.173418 0.857432 3999.351563 72.808823 4136.393066 166.211456 185.067963 18200 28.251127 0.956057 0.899506 0.995338 24.061829 0.845331 1 1 1 1 1 1 1 1 1 1 1 1 1 3701.5 3926.54274 0.015637631 0.015621252 0.0004553 0.998952614 1.001048484
15 5720 21620 6813.364746 47.161766 5273.15918 111.733772 172.793152 18100 28.251127 0.939944 0.886467 0.996666 60.978562 0.867649 8095.976074 75.558823 7123.246582 173.802109 183.686844 20800 28.251127 0.949334 0.852646 0.995865 46.581576 0.847842 1 1 1 1 1 1 1 1 1 1 1 1 1 6766.20298 8020.417251 0.028585002 0.031908213 -0.0477643 1.116257147 0.895850927
16 5970 21630 4444.64502 45.838234 3473.301514 127.74118 177.159134 16900 33.462406 0.94825 0.921638 0.995514 34.794144 0.859711 5010.146484 88.382355 4605.687988 177.688812 186.950348 19100 33.462406 0.959212 0.897011 0.99485 28.196184 0.841908 1 1 1 1 1 1 1 1 1 1 1 1 1 4398.806786 4921.764129 0.018583525 0.019580614 -0.0226983 1.053654491 0.949077718
17 6220 21630 3589.708008 93.279411 3173.438232 243.673004 173.34491 16100 33.462406 0.913145 0.925987 0.993095 14.731661 0.866646 4226.062988 45.64706 4157.35498 129.92601 185.583237 17500 33.462406 0.965324 0.896523 0.995964 32.526689 0.844394 1 1 1 1 1 1 1 1 1 1 1 1 1 3496.428597 4180.415928 0.014771271 0.016631254 -0.0515073 1.125918986 0.888163369
18 6470 21630 5016.617676 40.058823 3532.801514 111.347633 176.799423 17000 33.462406 0.951095 0.923691 0.996452 45.053653 0.860365 5965.607422 72.955879 4763.544434 151.197952 182.295258 19100 33.462406 0.957181 0.89991 0.9963 39.45561 0.850372 1 1 1 1 1 1 1 1 1 1 1 1 1 4976.558853 5892.651543 0.021024339 0.023443167 -0.0472943 1.115048937 0.896821625
19 2220 21820 2502.092773 30.088236 2436.037842 104.679428 185.583237 15100 46.798439 0.957895 0.940575 0.995773 23.902431 0.844394 2569.957275 52.132355 2887.125977 115.334671 187.460449 16400 46.798439 0.9603 0.929665 0.997009 22.282608 0.840981 1 1 1 1 1 1 1 1 1 1 1 1 1 2472.004537 2517.82492 0.010443413 0.010016847 0.0181113 0.959154517 1.042584883
20 2470 21820 4309.956055 49.794117 4346.905273 123.488785 182.12056 16000 46.798439 0.935443 0.893082 0.996254 34.901599 0.85069 4723.032227 72.073532 6587.603516 160.281311 187.460449 18500 46.798439 0.958619 0.882683 0.995331 29.467142 0.840981 1 1 1 1 1 1 1 1 1 1 1 1 1 4260.161938 4650.958695 0.017997795 0.018503249 -0.0120293 1.028084205 0.972682972

Total number of rows: 5184

Table truncated, full table size 1800 Kbytes.




Supplementary data files not provided
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