|
| Status |
Public on Jan 09, 2009 |
| Title |
CD133-H3K36me3 |
| Sample type |
SRA |
| |
|
| Source name |
CD133+ cells
|
| Organism |
Homo sapiens |
| Characteristics |
CD133 H3K36me3
|
| Treatment protocol |
Treatment protocol as described in Cui et al., 2008
|
| Growth protocol |
Growth protocol as described in Cui et al., 2008
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extract protocol as described in Cui et al., 2008
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Description |
Chromatin IP against H3K36me3
run50_lane3
run57_lane8
run134_lane1
|
| Data processing |
Sequence reads were obtained and mapped to the human (March, 2006) genomes using the Illumina Genome Analyzer Pipeline. More details as described in Cui et al., 2008
|
| |
|
| Submission date |
Sep 03, 2008 |
| Last update date |
May 15, 2019 |
| Contact name |
Chongzhi Zang |
| Organization name |
University of Virginia
|
| Street address |
P. O. Box 800717
|
| City |
Charlottesville |
| State/province |
VA |
| ZIP/Postal code |
22908 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE12646 |
Chromatin Signatures in Multipotent Human HSCs Indicate the Fate of Bivalent Genes during Differentiation |
|
| Relations |
| SRA |
SRX005147 |
| BioSample |
SAMN02195224 |
| Named Annotation |
GSM317585_CD133-H3K36me3.bed.gz |
| Named Annotation |
GSM317585_CD133-H3K36me3_islands.bed.gz |
