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Sample GSM3178 Query DataSets for GSM3178
Status Public on Mar 16, 2003
Title GC2_LT2_log_on_3
Sample type genomic
 
Channel 1
Source name Typhimurium LT2 OD=0.4
Organism Salmonella enterica
Extracted molecule genomic DNA
 
Channel 2
Source name Typhimurium LT2 overnight
Organism Salmonella enterica
Extracted molecule genomic DNA
 
 
Description slide 2D448-03
Keywords = Salmonella
 
Submission date Dec 13, 2002
Last update date May 27, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE115 LT2_log_overnight_1

Data table header descriptions
ID_REF
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
VALUE log ratio of PRE_VALUE
CH2%/CH1% ch2 % of total / ch1 % of total
PRE_VALUE ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL VALUE CH2%/CH1% PRE_VALUE
1 1960 40140 5137.791504 153.102936 5740.71875 501.565674 181.595459 18700 60.325314 0.948706 0.843826 0.994644 10.243507 0.851645 4598.526855 43.941177 4364.348145 122.216209 180.716904 16900 60.325314 0.944252 0.878685 0.995354 37.626162 0.853242 1 1 1 1 1 1 1 1 1 1 1 1 1 4984.688568 4554.585678 0.032632983 0.024636868 0.1220713 0.754968303 1.324558921
2 2210 40150 1562.012451 68.264709 1635.927856 157.552414 189.150833 16000 52.18327 0.966532 0.957878 0.994926 9.91424 0.837908 2245.352539 50.176472 2072.195801 145.934555 180.716904 13900 52.18327 0.934152 0.947121 0.996147 15.386024 0.853242 1 1 1 1 1 1 1 1 1 1 1 1 1 1493.747742 2195.176067 0.009779035 0.011874244 -0.0843103 1.214255192 0.823550113
3 2470 40150 6442.178711 64.455879 6253.191895 151.301666 182.64415 19600 58.938179 0.952302 0.862144 0.99527 42.578373 0.849738 6961.012695 65.264709 5565.332031 230.226334 175.534622 15900 58.938179 0.929889 0.866974 0.992348 30.235519 0.862664 1 1 1 1 1 1 1 1 1 1 1 1 1 6377.722832 6895.747986 0.041752683 0.037300787 0.0489663 0.893374622 1.11935125
4 2710 40160 2811.164795 113.823532 2767.441895 192.868759 187.799744 18800 44.800045 0.964364 0.934525 0.994736 14.575532 0.840364 4710.741699 42.294117 3622.506836 109.468468 168.691757 14700 44.800045 0.917356 0.918343 0.996307 43.032864 0.875106 1 1 1 1 1 1 1 1 1 1 1 1 1 2697.341263 4668.447582 0.017658534 0.025252775 -0.1553543 1.430060669 0.699271032
5 2960 40160 5436.962891 52.264706 4922.792969 124.553726 186.950348 18900 44.800045 0.966752 0.895355 0.996552 43.651547 0.841908 5618.240723 46.911766 4447.456543 122.403633 178.41243 16600 44.800045 0.943668 0.898026 0.996643 45.899297 0.857432 1 1 1 1 1 1 1 1 1 1 1 1 1 5384.698185 5571.328957 0.035251704 0.030136681 0.0680853 0.854899982 1.169727479
6 3210 40170 4192.40332 100.676468 4192.186035 219.30899 183.166229 18100 38.613392 0.948679 0.901787 0.994316 19.116423 0.848789 4532.515137 18.647058 4000.713623 56.673656 180.54068 16300 38.613392 0.930247 0.907753 0.9981 79.975696 0.853562 1 1 1 1 1 1 1 1 1 1 1 1 1 4091.726852 4513.868079 0.02678708 0.024416616 0.0402403 0.911507192 1.097084047
7 3460 40170 3444.574463 54.970589 3382.221436 119.7612 186.779999 19500 38.613392 0.959169 0.910591 0.996628 28.762024 0.842218 3614.882813 37.323528 3173.255127 122.684944 180.89296 16200 38.613392 0.934522 0.922745 0.995743 29.464763 0.852922 1 1 1 1 1 1 1 1 1 1 1 1 1 3389.603874 3577.559285 0.022190531 0.019351893 0.0594443 0.87207887 1.146685277
8 3710 40170 3346 74.764709 3144.047363 169.112183 188.982483 18700 38.613392 0.966308 0.920197 0.996223 19.785683 0.838214 3658.728516 45.955883 2848.251465 179.208908 184.723648 16200 38.613392 0.965261 0.934372 0.997772 20.415997 0.845957 1 1 1 1 1 1 1 1 1 1 1 1 1 3271.235291 3612.772633 0.021415614 0.019542371 0.0397533 0.912529093 1.095855472
9 3970 40180 4728.41748 40.220589 4426.631836 93.691597 184.378693 18200 43.881199 0.961509 0.900467 0.996895 50.467893 0.846584 5042.962891 38.764706 4250.560059 117.580345 180.364288 16200 43.881199 0.936613 0.899498 0.99649 42.889506 0.853883 1 1 1 1 1 1 1 1 1 1 1 1 1 4688.196891 5004.198185 0.030691958 0.027068932 0.0545533 0.88195521 1.133844427
10 4210 40190 3843.298584 68.352943 4089.350342 147.335617 190.157852 20100 32.540657 0.965278 0.902985 0.995018 26.085333 0.836077 4506.081055 49.676472 3687.804199 130.977661 178.768906 16000 32.540657 0.940823 0.91433 0.995834 34.403432 0.856784 1 1 1 1 1 1 1 1 1 1 1 1 1 3774.945641 4456.404583 0.024713227 0.024105782 0.0108083 0.975420282 1.025199105
11 4460 40190 3148.369629 57.382355 2774.648926 155.030472 184.723648 18400 32.540657 0.955304 0.934311 0.995163 20.30807 0.845957 3566.688721 41.073528 2743.236084 191.143799 172.054718 16700 32.540657 0.908778 0.931007 0.997276 18.659715 0.868991 1 1 1 1 1 1 1 1 1 1 1 1 1 3090.987274 3525.615193 0.020235594 0.019070915 0.0257443 0.942444021 1.061070979
12 4710 40190 1737.728271 68.205879 1381.345703 162.231506 185.239883 18400 32.540657 0.935544 0.964607 0.995102 10.711411 0.845018 2515.438232 20.867647 1852.620239 79.964523 184.378693 17800 32.540657 0.940854 0.955368 0.998009 31.456928 0.846584 1 1 1 1 1 1 1 1 1 1 1 1 1 1669.522392 2494.570585 0.010929769 0.013493742 -0.0915213 1.234586206 0.80998799
13 4960 40200 5112.07373 67.764709 4567.444336 171.467606 187.120529 19000 33.805984 0.957611 0.892426 0.994743 29.813642 0.841599 6106.081055 49.720589 5374.884766 124.343391 180.364288 18500 33.805984 0.9281 0.879921 0.995789 49.106599 0.853883 1 1 1 1 1 1 1 1 1 1 1 1 1 5044.309021 6056.360466 0.033023297 0.032760335 0.0034723 0.992037076 1.008026842
14 5210 40210 2892.448486 69.5 3000.914063 186.843658 183.339935 19400 37.772938 0.953868 0.927635 0.996552 15.480582 0.848473 3327.714355 22.529411 3111.565186 87.475624 186.438858 17500 37.772938 0.954006 0.918175 0.998108 38.041619 0.842838 1 1 1 1 1 1 1 1 1 1 1 1 1 2822.948486 3305.184944 0.01848084 0.017878554 0.0143893 0.96741025 1.033687622
15 5460 40210 6950.562012 40.941177 6365.57373 95.278679 190.659378 21700 37.772938 0.965329 0.853783 0.997299 72.949815 0.835165 7021.168457 70.544121 5461.807129 197.41716 184.205978 19000 37.772938 0.965182 0.869156 0.995598 35.565138 0.846898 1 1 1 1 1 1 1 1 1 1 1 1 1 6909.620835 6950.624336 0.04523483 0.037597627 0.0803133 0.831165431 1.203129922
16 5710 40220 3327.504883 112.308823 3215.262695 217.070877 186.950348 20800 43.71207 0.95376 0.92733 0.99337 15.329117 0.841908 4553.119141 32.029411 3938.4104 107.09153 189.150833 18500 43.71207 0.960647 0.905708 0.996429 42.516146 0.837908 1 1 1 1 1 1 1 1 1 1 1 1 1 3215.19606 4521.08973 0.021048745 0.02445568 -0.0651543 1.161859296 0.860689417
17 5970 40240 2192.974609 147.014709 2394.556885 295.65976 189.319046 19600 65.032768 0.967191 0.931107 0.988235 7.417224 0.837602 3599.74707 25.955883 3298.845215 68.494568 180.716904 17000 65.032768 0.940432 0.912262 0.998207 52.55522 0.853242 1 1 1 1 1 1 1 1 1 1 1 1 1 2045.9599 3573.791187 0.013394172 0.019331511 -0.1593503 1.443277788 0.692867311
18 6210 40220 3169.975098 102.352943 2621.11792 196.167511 189.319046 20000 43.71207 0.95938 0.936218 0.994392 16.159532 0.837602 4338.118164 52.029411 3226.165771 122.339508 176.258484 18600 43.71207 0.953141 0.917664 0.996124 35.459667 0.861348 1 1 1 1 1 1 1 1 1 1 1 1 1 3067.622155 4286.088753 0.020082631 0.023184502 -0.0623773 1.154455417 0.866209284
19 1970 40390 2706.849609 67.397057 2898.520508 150.061798 186.438858 17300 66.255257 0.953878 0.928123 0.99575 18.038233 0.842838 2868.914551 46.867645 2994.29248 113.351768 185.754669 15200 66.255257 0.955276 0.933693 0.996506 25.309835 0.844082 1 1 1 1 1 1 1 1 1 1 1 1 1 2639.452552 2822.046906 0.017279557 0.015265142 0.0538323 0.883422061 1.13196177
20 2210 40400 6399.699219 99.264709 7150.019531 227.692032 183.513474 18300 52.18327 0.964234 0.834267 0.994827 28.106821 0.848157 7301.299805 29.17647 7181.836426 84.674255 175.17157 16000 52.18327 0.943481 0.850067 0.997437 86.228096 0.863324 1 1 1 1 1 1 1 1 1 1 1 1 1 6300.43451 7272.123335 0.041246704 0.039336694 0.0205913 0.953693024 1.048555431

Total number of rows: 5184

Table truncated, full table size 1803 Kbytes.




Supplementary data files not provided
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