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Sample GSM3180 Query DataSets for GSM3180
Status Public on Mar 16, 2003
Title GC2_LT2_log_on_5
Sample type genomic
 
Channel 1
Source name Typhimurium LT2 OD=0.4
Organism Salmonella enterica
Extracted molecule genomic DNA
 
Channel 2
Source name Typhimurium LT2 overnight
Organism Salmonella enterica
Extracted molecule genomic DNA
 
 
Description slide 2D454-02
Keywords = Salmonella
 
Submission date Dec 13, 2002
Last update date May 27, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE115 LT2_log_overnight_1

Data table header descriptions
ID_REF
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
VALUE log ratio of PRE_VALUE
CH2%/CH1% ch2 % of total / ch1 % of total
PRE_VALUE ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL VALUE CH2%/CH1% PRE_VALUE
1 2350 20930 457.156464 52.661766 466.37616 106.582825 186.609512 14700 56.577671 0.960531 0.985245 0.996994 4.289213 0.840998 908.647949 140.735291 971.432556 330.798248 190.659378 19600 56.577671 0.966052 0.970108 0.993607 2.746834 0.732489 1 1 1 1 1 1 1 1 1 1 1 0 1 404.494698 767.912658 0.013533034 0.014946584 -0.0431473 1.104451767 0.905426593
2 2600 20940 411.561157 89.352943 371.869537 164.328552 187.460449 13900 47.7304 0.968546 0.989822 0.996529 2.504502 0.667867 770.96814 167.205887 836.592163 287.72757 186.268051 15700 47.7304 0.951123 0.977577 0.99234 2.679507 0.714535 1 1 1 1 1 0 1 1 1 1 1 0 1 322.208214 603.762253 0.010780005 0.011751575 -0.0374773 1.090127037 0.91732428
3 2860 20940 806.711853 102.985291 966.470215 196.42868 184.895889 17700 53.498985 0.948632 0.969284 0.995064 4.106894 0.836251 1327.311035 97.220589 1792.876343 156.529221 188.307541 20900 53.498985 0.962536 0.962158 0.995659 8.479637 0.839441 1 1 1 1 1 1 1 1 1 1 1 1 1 703.726562 1230.090446 0.023544327 0.023942371 -0.0072813 1.016906124 0.983374941
4 3110 20950 546.878601 121.058823 647.822327 249.721039 185.411636 14000 46.25256 0.953267 0.983101 0.991791 2.189958 0.583989 989.782349 162.632355 1610.838257 278.644531 191.326019 17000 46.25256 0.966324 0.966049 0.992592 3.552133 0.819889 1 1 1 1 1 0 1 1 1 1 1 1 1 425.819778 827.149994 0.0142465 0.016099574 -0.0531063 1.13007223 0.884899189
5 3350 20950 1093.055542 58.955883 1217.919067 135.464752 180.54068 16200 39.437916 0.958892 0.96418 0.995872 8.06893 0.853562 1792.98877 140.367645 2137.695801 209.206604 186.438858 17800 39.437916 0.954236 0.940697 0.993546 8.570421 0.842838 1 1 1 1 1 1 1 1 1 1 1 1 1 1034.099659 1652.621125 0.034597502 0.03216647 0.0316413 0.929733899 1.075576572
6 3600 20950 544.761902 111.602943 636.911865 200.397446 186.950348 14700 39.437916 0.963852 0.982658 0.994484 2.718407 0.724909 976 138.985291 1650.832031 276.054871 188.813965 20300 39.437916 0.966021 0.963379 0.991653 3.535529 0.819349 1 1 1 1 1 0 1 1 1 1 1 1 1 433.158959 837.014709 0.014492044 0.01629158 -0.0508343 1.124174034 0.889541983
7 3850 20950 330.147552 76.264709 335.21759 202.754211 183.686844 12200 39.437916 0.949687 0.991058 0.993866 1.628314 0.434217 489.969513 137.147064 437.512695 233.076202 191.990341 16400 39.437916 0.970188 0.989204 0.993515 2.102186 0.560583 1 1 1 1 1 0 1 1 1 1 1 0 1 253.882843 352.822449 0.008494067 0.006867305 0.0923293 0.80848249 1.236885168
8 4110 20950 439.870514 71.882355 506.352356 172.954956 185.583237 13900 46.25256 0.960368 0.988731 0.99437 2.543266 0.678204 597.536438 129.25 578.543884 201.230652 190.659378 19200 46.25256 0.970387 0.978981 0.994728 2.969411 0.791843 1 1 1 1 1 0 1 1 1 1 1 0 1 367.988159 468.286438 0.012311648 0.009114685 0.1305753 0.740330254 1.350748527
9 4360 20970 1493.662476 65.088234 3504.203613 163.948273 185.754669 16000 35.966873 0.950742 0.943649 0.995872 9.110572 0.844082 2197.376221 145.411758 5614.037109 233.422699 187.630173 19400 35.966873 0.948592 0.906189 0.993538 9.413721 0.840672 1 1 1 1 1 1 1 1 1 1 1 1 1 1428.574242 2051.964463 0.047795297 0.039939253 0.0779853 0.835631458 1.196699801
10 4610 20980 746.812134 80.926468 803.603455 206.82016 185.754669 16500 34.216576 0.958797 0.976501 0.993248 3.610925 0.821776 1074.566528 154.426468 1099.90564 228.150726 186.609512 17300 34.216576 0.963542 0.968758 0.993752 4.709897 0.842528 1 1 1 1 1 1 1 1 1 1 1 1 1 665.885666 920.14006 0.022278298 0.017909524 0.0947983 0.80390001 1.243935798
11 4860 20990 353.320007 92.573532 358.004425 202.934174 186.097076 12500 35.326084 0.954132 0.988716 0.994507 1.741057 0.464282 470.671967 161.588242 469.192749 353.878845 189.319046 18900 35.326084 0.970493 0.984962 0.994026 1.330037 0.354677 1 1 1 1 1 0 1 1 1 1 1 0 1 260.746475 309.083725 0.008723701 0.006015978 0.1613953 0.689613021 1.450088629
12 5110 20980 289.375 783.838257 237.411102 4657.633789 183.513474 12000 34.216576 0.946347 0.99366 0.947685 0.062129 0.016568 465.777771 497.132355 402.557465 2865.36499 190.32518 17100 34.216576 0.960384 0.987755 0.992332 0.162554 0.043348 1 1 1 1 1 0 1 1 1 1 1 0 1 -494.463257 -31.354584 -0.01654308 -0.000610283 1.4330853 0.03689052 27.10723501
13 5360 20980 342.5 101.25 359.471558 206.905075 183.166229 12800 34.216576 0.951926 0.989525 0.99369 1.655348 0.441426 483.579498 128.705887 429.147827 206.611908 190.157852 19500 34.216576 0.967892 0.987427 0.994118 2.340521 0.624139 1 1 1 1 1 0 1 1 1 1 1 0 1 241.25 354.873611 0.008071415 0.006907228 0.0676463 0.85576426 1.168546113
14 5610 21000 369.535217 63.632355 368.352661 152.806473 185.925949 14200 39.052406 0.962841 0.989136 0.996376 2.418322 0.644886 550.725891 111.617645 627.616211 193.367096 189.150833 19700 39.052406 0.961538 0.980789 0.993851 2.848085 0.759489 1 1 1 1 1 0 1 1 1 1 1 0 1 305.902862 439.108246 0.010234482 0.008546764 0.0782643 0.835094866 1.197468744
15 5860 21010 1444.989136 139.970581 1322.770386 254.671051 184.895889 18400 44.746494 0.943309 0.962173 0.993469 5.673943 0.845644 2352.466309 172.102936 2341.462891 266.481293 186.438858 20800 44.746494 0.95893 0.940033 0.992462 8.827885 0.842838 1 1 1 1 1 1 1 1 1 1 1 1 1 1305.018555 2180.363373 0.043661538 0.042438398 0.0123403 0.971985872 1.028821538
16 6120 21020 362.126495 42.073528 333.808411 105.954979 187.460449 16600 58.850292 0.960984 0.989983 0.997055 3.417739 0.815421 757.631287 125.426468 757.048462 232.953995 189.990387 19800 58.850292 0.959706 0.978088 0.993027 3.252279 0.809606 1 1 1 1 1 1 1 1 1 1 1 1 1 320.052967 632.204819 0.010707897 0.012305178 -0.0603843 1.14916848 0.870194421
17 6360 21000 395.463226 80.014709 509.206818 137.69342 185.754669 13600 39.052406 0.965443 0.982498 0.996773 2.872056 0.765882 720.865479 152.308823 940.772766 258.161072 183.686844 17100 39.052406 0.955393 0.97599 0.992622 2.792309 0.744616 1 1 1 1 1 0 1 1 1 1 1 0 1 315.448517 568.556656 0.010553848 0.011066336 -0.0205933 1.048559355 0.953689455
18 6610 21020 458.299988 52.838234 476.601349 106.81266 190.157852 15000 51.762989 0.964486 0.987083 0.997124 4.29069 0.836077 834.745117 149.705887 933.596619 235.321564 189.319046 20400 51.762989 0.970682 0.970123 0.994354 3.547253 0.819731 1 1 1 1 1 1 1 1 1 1 1 1 1 405.461754 685.03923 0.013565389 0.013333542 0.0074873 0.982908995 1.017388187
19 2360 21190 643.827332 108.735291 1204.996338 173.76297 185.067963 13900 53.498985 0.965893 0.976501 0.995697 3.705204 0.824721 1109.61853 149.617645 3661.341309 261.585236 193.969681 19400 53.498985 0.97465 0.969765 0.992996 4.2419 0.829146 1 1 1 1 1 1 1 1 1 1 1 1 1 535.092041 960.000885 0.017902383 0.018685372 -0.0185913 1.043736577 0.958096154
20 2610 21190 900.17218 95.426468 967.647583 182.788376 182.818344 15100 53.498985 0.938538 0.974617 0.995338 4.924669 0.849421 1528.292114 158.205887 1742.152588 233.506027 188.645309 17800 53.498985 0.965467 0.952972 0.994354 6.544979 0.838827 1 1 1 1 1 1 1 1 1 1 1 1 1 804.745712 1370.086227 0.026924089 0.026667236 0.0041633 0.990460113 1.009631774

Total number of rows: 5184

Table truncated, full table size 1780 Kbytes.




Supplementary data files not provided
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