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Sample GSM3181 Query DataSets for GSM3181
Status Public on Mar 16, 2003
Title GC2_LT2_log_on_6
Sample type genomic
 
Channel 1
Source name Typhimurium LT2 OD=0.4
Organism Salmonella enterica
Extracted molecule genomic DNA
 
Channel 2
Source name Typhimurium LT2 overnight
Organism Salmonella enterica
Extracted molecule genomic DNA
 
 
Description slide 2D454-03
Keywords = Salmonella
 
Submission date Dec 13, 2002
Last update date May 27, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE115 LT2_log_overnight_1

Data table header descriptions
ID_REF
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
VALUE log ratio of PRE_VALUE
CH2%/CH1% ch2 % of total / ch1 % of total
PRE_VALUE ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL VALUE CH2%/CH1% PRE_VALUE
1 1950 39640 414.419861 60.882355 386.340271 124.418472 181.77066 13100 77.248314 0.947312 0.986855 0.996925 3.330855 0.812413 1011.260193 132.426468 1179.586426 215.164032 190.992981 19600 77.248314 0.965815 0.960808 0.992912 4.69995 0.834558 1 1 1 1 1 1 1 1 1 1 1 1 1 353.537506 878.833725 0.010960181 0.014932173 -0.1343053 1.362402039 0.733997727
2 2200 39670 354.391998 74.514709 286.547852 159.388718 184.205978 12500 48.215183 0.95107 0.991226 0.995682 2.223445 0.592919 673.373047 197.073532 814.261292 299.405487 188.645309 19300 48.215183 0.962347 0.974083 0.992073 2.249034 0.599742 1 1 1 1 1 0 1 1 1 1 1 0 1 279.877289 476.299515 0.008676606 0.008092756 0.0302533 0.932709811 1.072144828
3 2460 39680 815.174438 108.191177 847.211243 229.313141 188.138428 17200 43.786945 0.958762 0.975098 0.993279 3.554853 0.819977 1220.320679 156.426468 1157.209229 238.64595 192.487091 18400 43.786945 0.972579 0.968971 0.99324 5.113519 0.831842 1 1 1 1 1 1 1 1 1 1 1 1 1 706.983261 1063.894211 0.021917517 0.018076516 0.0836773 0.824752003 1.212485689
4 2710 39690 503.045105 80.323532 601.964417 158.196213 179.834061 13300 36.098442 0.932524 0.980309 0.995308 3.179881 0.806945 1043.156128 120.691177 1547.737183 234.864975 186.950348 17300 36.098442 0.953563 0.964821 0.994385 4.441514 0.841908 1 1 1 1 1 1 1 1 1 1 1 1 1 422.721573 922.464951 0.013104988 0.015673506 -0.0777303 1.195995447 0.836123584
5 2960 39680 1064.345703 101.573532 1197.024658 246.003784 187.630173 16200 43.786945 0.959315 0.965225 0.994049 4.326542 0.840672 1737.030273 124.823532 2288.592285 227.930603 190.659378 19800 43.786945 0.961751 0.928444 0.993904 7.620873 0.835165 1 1 1 1 1 1 1 1 1 1 1 1 1 962.772171 1612.206741 0.029847349 0.027392838 0.0372693 0.917764529 1.089604107
6 3210 39680 576.61377 30.661764 794.726135 83.639351 185.239883 14500 43.786945 0.957583 0.968811 0.997726 6.894049 0.845018 993.777771 90.191177 1669.464844 214.98201 190.492355 19800 43.786945 0.96877 0.948036 0.995003 4.622609 0.835468 1 1 1 1 1 1 1 1 1 1 1 1 1 545.952006 903.586594 0.016925312 0.015352746 0.0423513 0.907087907 1.102428984
7 3450 39690 378.316681 70.455879 765.03363 140.200119 181.42009 12000 29.93836 0.943681 0.975853 0.996315 2.698405 0.719575 419.053894 143.235291 352.694977 234.467773 190.826248 16700 29.93836 0.965202 0.987915 0.992958 1.787256 0.476602 1 1 1 1 1 0 1 1 1 1 1 0 1 307.860802 275.818603 0.009544136 0.004686405 0.3088973 0.491024568 2.036557974
8 3710 39700 449.492188 60.794117 432.850647 138.493332 183.860046 12800 29.814396 0.95926 0.985847 0.995834 3.245587 0.809364 759.880188 116.779411 789.613342 215.209915 191.326019 19200 29.814396 0.971423 0.977524 0.994255 3.530879 0.819197 1 1 1 1 1 1 1 1 1 1 1 1 1 388.698071 643.100777 0.01205021 0.010926859 0.0424993 0.906777454 1.102806423
9 3960 39700 1044.05481 84.352943 1108.068115 215.087265 186.097076 14600 29.814396 0.945732 0.972054 0.994965 4.854099 0.84346 1974.763794 130.044113 2278.018066 194.036575 191.49231 18200 29.814396 0.969819 0.941719 0.994667 10.177276 0.83365 1 1 1 1 1 1 1 1 1 1 1 1 1 959.701867 1844.719681 0.029752165 0.031343441 -0.0226283 1.053484393 0.949230959
10 4220 39710 595.613953 79.470589 646.989014 178.683701 186.609512 15800 35.797916 0.959789 0.982452 0.99514 3.333342 0.8125 1309.724731 161.338242 1464.915771 241.269135 187.799744 17800 35.797916 0.965779 0.955009 0.993027 5.42848 0.840364 1 1 1 1 1 1 1 1 1 1 1 1 1 516.143364 1148.386489 0.016001201 0.019512116 -0.0861523 1.219415723 0.820064873
11 4460 39710 310.564819 35.10294 260.69693 100.048965 182.295258 10800 25.974968 0.941042 0.993088 0.997292 3.104128 0.80408 555.877014 154.955887 503.120575 235.529663 189.319046 18700 25.974968 0.961704 0.984001 0.99292 2.360115 0.629364 1 1 1 1 1 1 1 1 1 1 1 0 1 275.461879 400.921127 0.008539722 0.006812009 0.0981683 0.797685139 1.253627466
12 4720 39710 285.731476 72.397057 318.908783 151.004517 183.513474 10800 35.797916 0.950105 0.990051 0.995514 1.892205 0.504588 705.606812 215.132355 519.838928 258.11441 182.469788 11700 35.797916 0.938185 0.984451 0.993546 2.733698 0.728986 1 1 1 1 1 0 1 1 1 1 1 0 1 213.334419 490.474457 0.00661368 0.008333601 -0.1003903 1.260055081 0.793616101
13 4970 39710 310.590546 61.338234 284.365662 147.998352 187.799744 12700 35.797916 0.96165 0.991112 0.995316 2.098608 0.559629 497.778992 101.985291 475.528473 181.777084 188.645309 18100 35.797916 0.970573 0.98542 0.995583 2.738403 0.730241 1 1 1 1 1 0 1 1 1 1 1 0 1 249.252312 395.793701 0.007727187 0.00672489 0.0603363 0.870289507 1.149042925
14 5210 39740 339.385834 96.647057 314.156342 208.027817 186.438858 12700 35.101299 0.964797 0.990723 0.993858 1.631444 0.435052 586.386597 111.661766 675.635376 233.392029 192.65239 19400 35.101299 0.969233 0.977554 0.992195 2.512453 0.669988 1 1 1 1 1 0 1 1 1 1 1 0 1 242.738777 474.724831 0.007525258 0.008066 -0.0301373 1.071857012 0.932960263
15 5470 39740 1170.209473 59.867645 1046.580688 149.849869 189.319046 19100 42.88232 0.959671 0.970764 0.995834 7.809213 0.837602 2372.654785 124.25 2276.006104 181.414948 183.686844 19700 42.88232 0.959787 0.931412 0.995918 13.078607 0.847842 1 1 1 1 1 1 1 1 1 1 1 1 1 1110.341828 2248.404785 0.034422224 0.038202413 -0.0452523 1.109818256 0.901048432
16 5720 39750 391.316895 66.544121 391.815247 166.68045 187.120529 14200 49.241184 0.953516 0.986015 0.995659 2.347707 0.626055 877.238586 113.279411 925.268738 207.349579 189.487106 19700 49.241184 0.96437 0.971336 0.993721 4.230723 0.837296 1 1 1 1 1 0 1 1 1 1 1 1 1 324.772774 763.959175 0.010068432 0.012980351 -0.1103253 1.289212776 0.77566715
17 5970 39740 375.585938 33.794117 427.339447 93.576782 187.120529 12800 42.88232 0.96136 0.987183 0.998245 4.013666 0.833712 581.835144 65.764709 794.856079 140.870331 185.925949 18200 42.88232 0.955385 0.981964 0.99614 4.130289 0.836876 1 1 1 1 1 1 1 1 1 1 1 1 1 341.791821 516.070435 0.010596047 0.008768499 0.0822193 0.827525486 1.208421996
18 6220 39750 437.269501 60.132355 489.268066 153.352966 183.339935 14100 49.241184 0.95641 0.982529 0.995651 2.851393 0.760371 877.068604 147.911758 1044.000488 309.763641 187.969162 20400 49.241184 0.963343 0.968132 0.990723 2.831412 0.755043 1 1 1 1 1 0 1 1 1 1 1 0 1 377.137146 729.156846 0.011691804 0.012389028 -0.0251563 1.059633578 0.943722454
19 1960 39910 619.694641 92.970589 1433.601318 224.44931 186.097076 13100 61.202084 0.96237 0.981758 0.994858 2.760956 0.736255 1291.94043 132 2436.039307 176.19664 181.595459 16800 61.202084 0.950984 0.970322 0.995453 7.332378 0.851645 1 1 1 1 1 0 1 1 1 1 1 1 1 526.724052 1159.94043 0.016329218 0.019708428 -0.0816873 1.206942556 0.828539847
20 2210 39930 801.304077 75.926468 886.142639 146.268539 182.992371 14800 43.786945 0.951392 0.975967 0.996872 5.478308 0.849105 1253.417969 131.176468 1585.115601 213.756165 192.156067 20100 43.786945 0.972157 0.958466 0.994263 5.863775 0.832444 1 1 1 1 1 1 1 1 1 1 1 1 1 725.377609 1122.241501 0.022487769 0.019067889 0.0716443 0.847922664 1.179352837

Total number of rows: 5184

Table truncated, full table size 1782 Kbytes.




Supplementary data files not provided
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