NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM318336 Query DataSets for GSM318336
Status Public on Sep 05, 2009
Title DRW_N_rep2
Sample type RNA
 
Source name embryonic heart
Organism Gallus gallus
Characteristics the embryonic heart of Dwarf Recessive White Chicken in normoxia
Extracted molecule total RNA
Extraction protocol The extraction of total RNA with TRIzol reagent was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 microg total RNA (Expression Analysis Technical Manual,P/N900223 or 90365, Affymetrix).
 
Hybridization protocol Fragmented cRNA was hybridized to Affymetrix GeneChip® Chicken Genome Array for 16 h at 45°C. The hybridized probe array was automatically washed and then stained with streptavidin-phycoerythrin (SAPE) in a GeneChip® Fluidics Station 450.
Scan protocol The arrays were scanned on a Affymetrix GeneChip® Scanner 3000.
Description Gene expression data from the embryonic heart of Dwarf Recessive White Chicken in normoxia.
Data processing The data were analyzed by GeneChip® Operating Software (GCOS) with Affymetrix default analysis settings.
 
Submission date Sep 05, 2008
Last update date Sep 05, 2008
Contact name mei li
E-mail(s) meili.emily@gmail.com
Organization name China Agricultural University
Street address Haidian district
City Beijing
ZIP/Postal code 86100193
Country China
 
Platform ID GPL3213
Series (1)
GSE12675 Hypoxia effect on embryonic hearts of Tibetan Chicken, Dwarf Recessive White Chicken and Shouguang Chicken

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 454.22 P 0.000752926
AFFX-BioB-M_at 546.064 P 7.00668e-05
AFFX-BioB-3_at 416.346 P 0.000581214
AFFX-BioC-5_at 1174.58 P 6.02111e-05
AFFX-BioC-3_at 1113.3 P 5.16732e-05
AFFX-BioDn-5_at 3235.8 P 4.42873e-05
AFFX-BioDn-3_at 7188 P 0.000126798
AFFX-CreX-5_at 16480.3 P 5.16732e-05
AFFX-CreX-3_at 23001.2 P 4.42873e-05
AFFX-DapX-5_at 722.107 P 9.4506e-05
AFFX-DapX-M_at 1803.83 P 0.000509415
AFFX-DapX-3_at 1901.21 P 9.4506e-05
AFFX-LysX-5_at 80.9474 P 0.0044838
AFFX-LysX-M_at 181.215 A 0.185131
AFFX-LysX-3_at 428.657 P 7.00668e-05
AFFX-PheX-5_at 132.107 P 0.00010954
AFFX-PheX-M_at 210.342 P 0.0125468
AFFX-PheX-3_at 295.476 P 0.000581214
AFFX-ThrX-5_at 204.677 P 0.00556451
AFFX-ThrX-M_at 300.244 P 0.000258358

Total number of rows: 38535

Table truncated, full table size 1492 Kbytes.




Supplementary file Size Download File type/resource
GSM318336.CEL.gz 3.3 Mb (ftp)(http) CEL
GSM318336.CHP.gz 207.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap