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Sample GSM318344 Query DataSets for GSM318344
Status Public on Sep 05, 2009
Title T_N_rep2
Sample type RNA
 
Source name embryonic heart
Organism Gallus gallus
Characteristics the embryonic heart of Tibetan Chicken in normoxia
Extracted molecule total RNA
Extraction protocol The extraction of total RNA with TRIzol reagent was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 microg total RNA (Expression Analysis Technical Manual,P/N900223 or 90365, Affymetrix).
 
Hybridization protocol Fragmented cRNA was hybridized to Affymetrix GeneChip® Chicken Genome Array for 16 h at 45°C. The hybridized probe array was automatically washed and then stained with streptavidin-phycoerythrin (SAPE) in a GeneChip® Fluidics Station 450.
Scan protocol The arrays were scanned on a Affymetrix GeneChip® Scanner 3000.
Description Gene expression data from the embryonic heart of Tibetan Chicken in normoxia.
Data processing The data were analyzed by GeneChip® Operating Software (GCOS) with Affymetrix default analysis settings.
 
Submission date Sep 05, 2008
Last update date Sep 05, 2008
Contact name mei li
E-mail(s) meili.emily@gmail.com
Organization name China Agricultural University
Street address Haidian district
City Beijing
ZIP/Postal code 86100193
Country China
 
Platform ID GPL3213
Series (1)
GSE12675 Hypoxia effect on embryonic hearts of Tibetan Chicken, Dwarf Recessive White Chicken and Shouguang Chicken

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 466.703 P 0.000662269
AFFX-BioB-M_at 516.992 P 0.000169227
AFFX-BioB-3_at 472.434 P 0.000126798
AFFX-BioC-5_at 1256.1 P 5.16732e-05
AFFX-BioC-3_at 1086.38 P 4.42873e-05
AFFX-BioDn-5_at 3585.26 P 4.42873e-05
AFFX-BioDn-3_at 7759.73 P 0.000146581
AFFX-CreX-5_at 16871.6 P 5.16732e-05
AFFX-CreX-3_at 25058.1 P 4.42873e-05
AFFX-DapX-5_at 810.926 P 8.14279e-05
AFFX-DapX-M_at 2056.66 P 0.000581214
AFFX-DapX-3_at 2169.06 P 8.14279e-05
AFFX-LysX-5_at 116.735 P 0.00499819
AFFX-LysX-M_at 247.072 A 0.147939
AFFX-LysX-3_at 525.855 P 0.000195116
AFFX-PheX-5_at 205.54 P 0.000296708
AFFX-PheX-M_at 261.112 P 0.002867
AFFX-PheX-3_at 385.392 P 0.000581214
AFFX-ThrX-5_at 207.141 P 0.0284573
AFFX-ThrX-M_at 326.22 P 0.000169227

Total number of rows: 38535

Table truncated, full table size 1489 Kbytes.




Supplementary file Size Download File type/resource
GSM318344.CEL.gz 3.3 Mb (ftp)(http) CEL
GSM318344.CHP.gz 207.9 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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