|
| Status |
Public on May 12, 2009 |
| Title |
CHM105Nsp |
| Sample type |
genomic |
| |
|
| Source name |
complete hydatidiform mole
|
| Organism |
Homo sapiens |
| Characteristics |
complete hydatidiform moles
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
QIAamp DNA Mini Kit (Qiagen).
|
| Label |
biotin
|
| Label protocol |
Biotinylated DNA was prepared according to the standard Affymetrix protocol from 250 ng genomic DNA.
|
| |
|
| Hybridization protocol |
Hybridizations were performed according to the standard Affymetrix protocol using an Affymetrix hybridisation oven 640 and an Affymetrix Fluidic station 450.
|
| Scan protocol |
Genechips were scanned using Gene Chip Scanner 3000 7G and Gene Chip Operating System.
|
| Description |
CHM105N
|
| Data processing |
CEL and CHP files were processed by Affymetrix GCOS 1.4 with default analysis settings. Calls were generated by Affymetrix GTYPE 4.0 using the DM algorithm with confidence threshold 0.33.
|
| |
|
| Submission date |
Sep 09, 2008 |
| Last update date |
May 12, 2009 |
| Contact name |
Kenshi Hayashi |
| E-mail(s) |
hayashi.kenshi@gmail.com
|
| Phone |
+81-92-642-6171
|
| Organization name |
Kyushu University
|
| Department |
Medical Institute of Bioregulation
|
| Street address |
Maidashi 3-1-1, Higashi-ku
|
| City |
Fukuoka |
| ZIP/Postal code |
812-8582 |
| Country |
Japan |
| |
|
| Platform ID |
GPL3718 |
| Series (1) |
| GSE12713 |
Definitive haplotypes from a collection of complete hydatidiform moles (CHMs) |
|
